| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2934 |
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| Symbol | |
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| ID | 6160112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3236621 |
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| End bp | 3237871 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641665713 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001791964 |
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| Protein GI | 171059615 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCA TGCCCGAGAA CCACCCCCAC GCCGACGCAC CGGCCCCCTC GCCCGCCCCG
TTCAGCCCGC AGGATCAGCA GGCGATGGCC CAGGCCCTCG CACTGGCCGA GCAGGGTTTC
GGGCTGACCG AACCCAATCC GCGCGTCGGC TGCGTGATCG TCGACGCCCA GGGCCGGCTG
CTCGGCAGCG GCCACACCCA GCAGGCCGGC GGCCCGCATG CCGAGGTGAT GGCGATGCGC
ACGGCGCGCG CCGCCGGCCA CTCGCTGATC GGCGCCACCG CCTACGTGAC GCTCGAACCG
TGCGCGCACC ACGGCCGCAC GCCGCCCTGC GCCGACGCGC TGATCGAAGC CGGCCTGAAG
CGCGTGGTCG CGGCGATCAC CGATCCGTTT CCGCTGGTCG CCGGCCAGGG CCTGGCGCGG
CTGGCGGCGG CCGGCATCCA GGTCGAACAG GGCCTGATGG CCGAGGCCGC CACCGCCATC
AACATCGGTT TCTTCTCGCG CGTGCTGCGC CAGCGGCCGT GGGTGCGCAT GAAGGTGGCG
GCCAGCCTGG ACGGCCGCAC CGCGCTGATG AACGGCCAGA GCCAGTGGAT CACCGGCGCG
GCCGCACGCG CCGACGGCCA CGCCTGGCGG CGCCGCGCCA GCGCCGTGCT GACGGGCATC
GGCACCGTGC TCGACGACGA CCCGCGCCTC GACGTGCGCC ACGTGCCCAC GCCGCGCCAG
CCGATGCGGG TGGTGGTCGA TGCGCCGCTG CGCACGCCGG TCACGGCCCG GCTGCTCGCG
CCGCCCGGCG AGGTGCTGGT CTACACCAGC GCCGACGAGA CCGCCCAGGC CGCCTGGCTG
GCCGAGGTGC AGGCGGCGCA CGGCGCCCGC GCCGCGCTCG GCCCGGACGG CACCGACGTC
GCGCCGCCGC TCGTGCAGTG CGTGTCGATG CCGGGCGGAC CGGCCGGCAA GGTCGATCTG
GCGGCGATGC TGGCCGACCT GGCGCGGCGC GGCGTCAACG AGCTGCACGT CGAGGCCGGC
CATCGGCTCA ACGGCTCGCT GCTGCGCGAG GGCCTGGTCG ATGAATTCCT GGTCTACCTC
GCACCCAAGC TGCTCGGCCT GGGCCGCGAG ATGTGGAGCT GGGGCCCGCT CGAAAGCCTG
GACCAGGCGA TCGAGCTCGA ATGGGGCGAC GTCCAGTCCG TCGGAGGCGA CCTGCGTCTG
CTGGCGCGCC CGCGCGGCCG GCTCGCCGGC TGGCTGCCCG GCACGCCCTG A
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| Protein sequence | MPAMPENHPH ADAPAPSPAP FSPQDQQAMA QALALAEQGF GLTEPNPRVG CVIVDAQGRL
LGSGHTQQAG GPHAEVMAMR TARAAGHSLI GATAYVTLEP CAHHGRTPPC ADALIEAGLK
RVVAAITDPF PLVAGQGLAR LAAAGIQVEQ GLMAEAATAI NIGFFSRVLR QRPWVRMKVA
ASLDGRTALM NGQSQWITGA AARADGHAWR RRASAVLTGI GTVLDDDPRL DVRHVPTPRQ
PMRVVVDAPL RTPVTARLLA PPGEVLVYTS ADETAQAAWL AEVQAAHGAR AALGPDGTDV
APPLVQCVSM PGGPAGKVDL AAMLADLARR GVNELHVEAG HRLNGSLLRE GLVDEFLVYL
APKLLGLGRE MWSWGPLESL DQAIELEWGD VQSVGGDLRL LARPRGRLAG WLPGTP
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