| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2933 |
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| Symbol | |
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| ID | 6160111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3235366 |
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| End bp | 3236547 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665712 |
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| Product | hypothetical protein |
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| Protein accession | YP_001791963 |
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| Protein GI | 171059614 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGG TGTCCGGGCT CGCGCTGATC GAGGTTCTGG TCGCGATGGC GGTGCTGGCG
ATCGGTCTGG GCGGCACGCT GCGGCTGCAG ACCTGGCTGC GTGTGGGCAC CGACCTGTCG
CGCCAGCGGG CCGAAGCGCT GCGGCTGGCC CAGGACAGCC ACGAATCCCT GCGCGCCTAC
GCCAGCCTGG CGGACTGGAC GGCCATTGCC GGCCACAGCC CCACGGGTGT CGCGCTGACG
CATGCCAACA CGGCGTACCA GCTCGAACGC AGCGTGACGA CGCAGACCGA TCCGCGCCTG
AAGCACGTCA GCACGGTGCT GAGCTGGCCG GACCGCGACG GCCAGCAGCA GCAACTGCAG
CTCGACACCC TGCTGGTCGG GCAGGACCCG ACGCTCGCGG CCGCGCTGAC ACTCGACCGC
GGCGCAGGGG CCACCGCGGG CAGCGTGGGC CGCGGGGCCA GCCCGCGCCA CGCGCTGATC
CCGGCCCGCG CCAAGTCGCT GGGCGGCGGA CGCAGCGTCT TCAAGCCACG GGCGCAAGAC
CTGCTGGCCT GGGTCTTCGA CGATCAGACC GGCAGCGTGG TGGCACGCTG CGACAGCACC
GCCGGCCTGT CGAGCGCACA GCTCGACGCC AACAGCCTGG GCGCCTGCCG CGCCATCGCC
GGCCTGCTGA TCGGCGGCCA CGTGCGCTTT GCGCTCGACA CCGACAGCCC CGGCGCCGGC
GACGCCCAGA ACCCGCTGAG CCCCGCCCTG CCGCTCGACC TGCGCCTGCA GCTGACCAGC
ACCGGCCACC CCGACCCCGG TTGGGAATGC GCCGACGACG CGCCCGACTC GATCGGCGGC
GCGCCGGCCC AGCTCGGCGT GATCTATCAC TGCGTGATCC AGGGCGCCGG CCTGCCGCCG
CGCTGGTCGG GCCGGCTCGA CATCGTGCCG ATCGGCTGGA CGCTGGCCAG CAGCGGTGTC
ACCGGCTACC GCGTCTGCCG CTACAGCGCC GACCACAACC GCAACGGCCG CATCGACAAC
GCCGAACACC CGGCCAGCCA CGCCGCGGTC GGCGAACCGC TGGGCGACCA GAACTTCCTG
ATCCTGCGCG CCGCGGCCGG CTGCCCGACC GACAGCGGCG TCTCGTTTGC GGGGCAAGGC
GGCAACTGGC TGGACGACAG CAGCGTGGCG CACCAGCCCT GA
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| Protein sequence | MKPVSGLALI EVLVAMAVLA IGLGGTLRLQ TWLRVGTDLS RQRAEALRLA QDSHESLRAY
ASLADWTAIA GHSPTGVALT HANTAYQLER SVTTQTDPRL KHVSTVLSWP DRDGQQQQLQ
LDTLLVGQDP TLAAALTLDR GAGATAGSVG RGASPRHALI PARAKSLGGG RSVFKPRAQD
LLAWVFDDQT GSVVARCDST AGLSSAQLDA NSLGACRAIA GLLIGGHVRF ALDTDSPGAG
DAQNPLSPAL PLDLRLQLTS TGHPDPGWEC ADDAPDSIGG APAQLGVIYH CVIQGAGLPP
RWSGRLDIVP IGWTLASSGV TGYRVCRYSA DHNRNGRIDN AEHPASHAAV GEPLGDQNFL
ILRAAAGCPT DSGVSFAGQG GNWLDDSSVA HQP
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