| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2929 |
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| Symbol | |
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| ID | 6160031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3232389 |
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| End bp | 3232955 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665708 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_001791959 |
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| Protein GI | 171059610 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGA CCCCCTCCTC TGCCAGCCCC GCCAGCCCGG CCGCCAAGGG CTTCACGCTG
ATCGAGATGC TGATCACGGT GGCGGTTCTC GCCATCATCC TGACCAGCGT CGTGCCGTCG
ATGCGGGCAT TCGTCGCACG CAGGCATCTC GACGGCGCAT CGGCGCAGTT GCAGGCCGAC
CTGCACTTCC TGCGCAGCAG CAGCGTCGCC CTCAACCAGG CCCTGCGCAT CAGCGTGCAC
AGCGGCAGCG CCGGCAGCTG CTACCTCGTT CACAGCGGCG ATGCCGACCA ATGCGCCTGC
ACTTTCGTGG CCGGCGCCGA GCCCGTCGGC AATTGCGAGC CGGGTGCCGA ACTGCTGCGC
AGCCAGGCCT GGGCCGGCAA CGCCGTGGCG GTGCGTGCCA ACGTCGCATC GATGCGCGTC
GACCCGCGAC ACGGCACCTT CAGCCCCACC GGAAGCATCG AGATCCAGGC CGGCGACGGC
CCGGTGCTGC GTCATGTCGT GAACATCCTG GGCCGCTTGC GGTTGTGCGC ACCGGGCACG
GCGATCACCG GCGTGGCAGC ATGCTGA
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| Protein sequence | MTETPSSASP ASPAAKGFTL IEMLITVAVL AIILTSVVPS MRAFVARRHL DGASAQLQAD
LHFLRSSSVA LNQALRISVH SGSAGSCYLV HSGDADQCAC TFVAGAEPVG NCEPGAELLR
SQAWAGNAVA VRANVASMRV DPRHGTFSPT GSIEIQAGDG PVLRHVVNIL GRLRLCAPGT
AITGVAAC
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