| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2925 |
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| Symbol | |
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| ID | 6160027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3227454 |
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| End bp | 3229028 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641665704 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001791955 |
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| Protein GI | 171059606 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.769934 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTACC AAGACCTGCG CGGCTTTCTC GCCGTCCTCA AGACCCGCGG CGAACTTCTC
GAAGTCCCTG ATCCGGTCTC CACGCACCTG GAAATGACCT GTCTGTCCGA CAGGGCCTTG
CGCGAATCCG GGCCGGCTCT TCTGTTTCGA GTTCCATGCA ACGGACACAA ACATTTTCAG
GTTCCGGTCT TAACAAACCT GTTCGGAACG CCGGGTCGTG TCGCCCTGGG CATGGGGGCG
CCGGATGTTT CCGCGCTGCG CGAGATCGGT GAGCTGCTCG CCAGCCTCAA GGAGCCCGAG
CCGCCCAAGG GCCTGAAAGA TGCCGGGCGC CTGTTCCAGC TGGCTCGCAC CTTGTGGGAC
ATGAAACCGT CGCAGGTCCG CCGTCCGGTG TGCCAGCAGG TGGTGCGGGA GGGTGCTGAC
GTCGATCTGG CCGAACTGCC GATCCAGCAC TGCTGGCCCG GCGACGTGGC GCCGCTGATC
ACCTGGGGCC TGGTCGTCAC GCGCGGTCCG CAGTCGGTGC CCCGCCCGCG CCTGCGCCAG
AACCTGGGCA TCTACCGCCA GCAGGTGATC GGGCCGCGCC AGACCATCAT GCGCTGGCTC
GCTCATCGCG GCGGCGCGCT CGATTTCCGC GATTTCTCGC GCGCCAATCC GGGCCAGCCG
TTTCCGATCG TGACGGCGCT GGGCGCCGAT CCGGCGACGA TGCTGGGCGC CGTCACGCCG
GTTCCGGACT CCTTGTCGGA GTACCAGTTT GCCGGCCTGC TGCGCGGCGC CCGCACCGAG
CTGGCGCACA GCGGTGTTGG CGAGGGCGAC CTGAAGCTGC AGGTGCCGGC CAGCGCCGAG
ATCGTGCTCG AGGGCCACAT CCCGGTGGCC GCAGCGGGCT TCGAGGGCCG CAGCGAACAC
GGCGTGGCGC TCAAGTCGAT CGGCGGCTAC CTGCATGCGC TCGAGGGCCC TTACGGCGAC
CACACCGGCT ATTACAACGA GCAGGACTGG TTCCCGGTGT TCGAGATCGA GCGCATGACG
ATGCGCGACA ACGCGATCTA CCACTCCACC TACACCGGCA AGCCGCCCGA CGAGCCGGCC
ATCCTGGGCG TGGCGCTCAA CGAGGTCTTC GTGCCGATCC TGCGCAAGCA GTTTCCCGAG
ATCGTCGACT TCTACCTGCC GCCCGAAGGC TGCAGCTACC GCATGGCGGT CATCAGCATC
AGGAAGAGCT ACCCCGGCCA TGCCAAGCGG CTGATGTTCG GCCTGTGGAG CTACCTGCGC
CAGTTCATGT ACACCAAGTT CATCGTGGTG GTCGACGACG ACGTGGACAT CCGCTCGTGG
CAGGAAGTGA TCTGGGCCAT CACCACCCGC ATGGACCCGG TGCGCGACAC CACGCTGGTC
GAGAACACGC CGATCGACTA CCTTGACTTC GCCTCGCCGG TCTCGGGCCT GGGCGGCAAG
ATGGGGCTGG ACGCCACCAA CAAGTGGCCG GGCGAAACCA GCCGCGAATG GGGCCGCAAC
ATCACGATGG ATGCCGACGT GACGCAGCGC ATGGAGGCCC TGTGGTCCCG TCTCCATGCG
AGCAGATCCG TCTGA
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| Protein sequence | MNYQDLRGFL AVLKTRGELL EVPDPVSTHL EMTCLSDRAL RESGPALLFR VPCNGHKHFQ
VPVLTNLFGT PGRVALGMGA PDVSALREIG ELLASLKEPE PPKGLKDAGR LFQLARTLWD
MKPSQVRRPV CQQVVREGAD VDLAELPIQH CWPGDVAPLI TWGLVVTRGP QSVPRPRLRQ
NLGIYRQQVI GPRQTIMRWL AHRGGALDFR DFSRANPGQP FPIVTALGAD PATMLGAVTP
VPDSLSEYQF AGLLRGARTE LAHSGVGEGD LKLQVPASAE IVLEGHIPVA AAGFEGRSEH
GVALKSIGGY LHALEGPYGD HTGYYNEQDW FPVFEIERMT MRDNAIYHST YTGKPPDEPA
ILGVALNEVF VPILRKQFPE IVDFYLPPEG CSYRMAVISI RKSYPGHAKR LMFGLWSYLR
QFMYTKFIVV VDDDVDIRSW QEVIWAITTR MDPVRDTTLV ENTPIDYLDF ASPVSGLGGK
MGLDATNKWP GETSREWGRN ITMDADVTQR MEALWSRLHA SRSV
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