Gene Lcho_2922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2922 
Symbol 
ID6160262 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp3224987 
End bp3225622 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content69% 
IMG OID641665701 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_001791952 
Protein GI171059603 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.969034 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCACA TCGCAGACCT GCGCAAGAGT TACGAGAGCG GCGAACTCGA CGAGGCCTTC 
GCCGCCGACA CCCCGCTGCT CCAGTTCGAC ACATGGCTGC AGCAGGCGCT GTCGGCCGGC 
CTGCCCGAGC CCAACGCCAT GACGGTGGCC ACCGTGTCCG CCGATGGCCG GCCGTCGACA 
CGCGTGGTGC TGATCAAGGG CTACGACTCG CGCGGCATCG TCTGGTACAC CAACTACAAG 
AGCCGCAAGG GCCAGGAACT GGCGGGCAAC CCGTTTGCCG CACTGCAGTT CCATTGGGTG 
ACACAGGAGC GCGTGGTGCG CATCGAAGGC CGGGTCGAAA AGACCAGCGC CGAGGAGTCG 
GACGCCTACT ACGACTCGCG CCCGCTCGAT TCGCGGCTGG GCGCATGGGC GTCGCCGCAG 
AGCCAGCCGA TCGGCTCGCG CGCCGTGCTG GTGGCCAACG CGGCACGCAC GGCGGCCCAA 
TACGGCCTGC ATCCGCCGCG CCCGCCGCAT TGGGGCGGCT ATCGACTGGT TCCCGATCGC 
TGGGAGTTCT GGCAGGGACG CAAGTCGCGC CTGCACGACC GGCTGGTCTA CCGGCTGGTC 
GACGGCACCT GGCTGCGCGA ACGCCTGGCG CCCTGA
 
Protein sequence
MKHIADLRKS YESGELDEAF AADTPLLQFD TWLQQALSAG LPEPNAMTVA TVSADGRPST 
RVVLIKGYDS RGIVWYTNYK SRKGQELAGN PFAALQFHWV TQERVVRIEG RVEKTSAEES 
DAYYDSRPLD SRLGAWASPQ SQPIGSRAVL VANAARTAAQ YGLHPPRPPH WGGYRLVPDR 
WEFWQGRKSR LHDRLVYRLV DGTWLRERLA P