Gene Lcho_2919 details

Gene Information

• Locus tag: Lcho_2919
• ID: 6160259
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 3221445
• End bp: 3223289
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641665698
• Product: phosphogluconate dehydratase
• Protein accession: YP_001791949
• Protein GI: 171059600
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR01196] 6-phosphogluconate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 0.511379
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGCCCC AGATCGCCGA CATCACCCAG CGCATCCGCG AACGCAGCCG CCCGACGCGT 
GACGCCTACC TCGCCCGCAC CCGTGCCGCC GCCGCCCGTC CCAGAGGCGC CGACCGCATG 
GGCTGCGCCA ACGTGGCGCA CGCCTTTGCC GCGCTGCCGG GCGCCGACAA GTTCCGCGTG 
GTGGCCGAGA AGGCACCCAA CATCGGCATC ATCACCGCCT ACAACGACAT GCTCTCGGCG 
CACCAGCCGT ACGAGGGCTT CCCGGCCGTG ATCCGCGACG AGGCGCACAA GCTCGGCGCC 
ACCGTGCAGG TCGCCGGCGG CGTGCCGGCG ATGTGCGACG GCGTCACCCA AGGCCTGCCC 
GGCATGGAGC TGAGCCTGTT CTCGCGCGAC ACCATCGCGA TGGCCACCGC GGTCGGCCTG 
ACGCACGACG TGTTCGATGC CGCGCTGCTG CTGGGCGTGT GCGACAAGAT CGTGCCCGGC 
CTCTTGATCG GCGCGCTGCA TTTCGGCCAC CTGCCGTGCG TGTTCGTGCC GGCCGGGCCG 
ATGAGCACGG GCCTGTCCAA CAGCGACAAG TCCAAGGTGC GCGAGCAGTT CGCACAAGGC 
CTGGTCGGCC GCGACAAGCT GCTCGAAGCC GAATCGGCCG CCTACCACGG CGCCGGCACC 
TGCACCTTCT ACGGCACCGC CAACAGCAAC CAGATGCTGC TCGAGGCGAT GGGCCTGCAC 
GTGCCGGGCT CGGCCTTCGT GCACCCGCAC GCCCAGCTTC GCGAGGAACT CACCCGCGCC 
GCGGTGCGCC AGGTGCTCGC CATCCGCCAG GGCCAGCGCC TCGCCGACGG GTCGGGCGGC 
GATCGATACC GGCCGATCGG CGAATTGGTC GACGAGCGCT GCATCGTCAA CGCCATGATC 
GCGCTGCTCG CCACCGGCGG CTCCACCAAC CACCTGATCC ACTGGGTGGC GGTGGCGCGC 
TCGGCCGGCA TCCTGATCGA CTGGACCGAC TTCTCCGAGC TGTCGGGCTG CGTGCCGCTG 
CTGGCCCGCG TCTATCCGAA CGGCAAGGCC GACGTCAACC AGTTCCAGAG CGCCGGCGGC 
CCCGGCTTCG TGCTGCGCGA GCTGCTCGAC AGCGGCTGCC TGCACGGCGA CGTCATGACC 
GTGGCCGACG GCGGCATGGC CGCCTACGGC ACGCTGCCGG CGTTCGGTGC CGACGGCCGG 
CTGGCCTGGG CGCCGCTGCC GGCCGAGTCG GGCGACGAGT CCATCGTGCG CAAGGCCAGC 
GCCCCGTTCG GCGAGACCGG CGGCCTCAAG CTGCTGGCCG GCAACCTCGG CCGCGGCGTG 
ATGAAGGTCA GCGCGGTGCC CGAAGACCGC CACGTCATCG AAGCGCCCGC GATCGTCTTC 
AACAGCCAGG ACGAACTGCA CGTCGCCTTC AAGAAGGGCG AACTCGAACG CGACTTCGTC 
GCCGTCGTGC GCTTCCAGGG CCCCAAGGCG AACGGCATGC CCGAGCTGCA CAAGCTGACC 
CCGCCGCTGG CGGTGCTGCA GGACCGCGGC TTCCGCGTCG CGCTGGTCAC CGACGGCCGC 
ATGAGCGGCG CTTCGGGCAA GGTGCCGGCC GCCATCCACG TCAGCCCCGA AGTGCTGGCC 
GGTGGGCCGC TGGGCAAGGT TCGCAGCGGC GACATCGTGC GGGTCGACGC CGTCACCGGC 
ACGCTCGACG CCCTGGTGAG TGCCGAGGAA TGGGCCGCCC GTGCCATCGA GGACCGTCCC 
GCCGCCGTGG CCGAAGAGGC CGCCTACGGC CTTGGCCGCG AACTCTTCGG CGGCATGCGC 
CGCAGCGTGC TGACCGCCGA AGAAGGCGCG ATCACCTGGC TGTGA 

 

Protein sequence

MKPQIADITQ RIRERSRPTR DAYLARTRAA AARPRGADRM GCANVAHAFA ALPGADKFRV 
VAEKAPNIGI ITAYNDMLSA HQPYEGFPAV IRDEAHKLGA TVQVAGGVPA MCDGVTQGLP 
GMELSLFSRD TIAMATAVGL THDVFDAALL LGVCDKIVPG LLIGALHFGH LPCVFVPAGP 
MSTGLSNSDK SKVREQFAQG LVGRDKLLEA ESAAYHGAGT CTFYGTANSN QMLLEAMGLH 
VPGSAFVHPH AQLREELTRA AVRQVLAIRQ GQRLADGSGG DRYRPIGELV DERCIVNAMI 
ALLATGGSTN HLIHWVAVAR SAGILIDWTD FSELSGCVPL LARVYPNGKA DVNQFQSAGG 
PGFVLRELLD SGCLHGDVMT VADGGMAAYG TLPAFGADGR LAWAPLPAES GDESIVRKAS 
APFGETGGLK LLAGNLGRGV MKVSAVPEDR HVIEAPAIVF NSQDELHVAF KKGELERDFV 
AVVRFQGPKA NGMPELHKLT PPLAVLQDRG FRVALVTDGR MSGASGKVPA AIHVSPEVLA 
GGPLGKVRSG DIVRVDAVTG TLDALVSAEE WAARAIEDRP AAVAEEAAYG LGRELFGGMR 
RSVLTAEEGA ITWL