| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2917 |
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| Symbol | |
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| ID | 6160257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3218996 |
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| End bp | 3220726 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665696 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001791947 |
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| Protein GI | 171059598 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.12894 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCA AAGAGACCGC CCGCCGCCTG CTGAGCTATC TGCGGCCGCA CAAGCTCGAG
TTCGGCCTCG GCATCCTGTG TTTCTTCCTG TCCGCGGCGG TCGAGCCGCT GATCCCGGCG
CTGCTCAAGG AGCTGCTCGA CCAGGGCTTC AAGCCCGAGC AGACGATCCC GACCTGGATC
ATGCCGGTGA TCGTGATCGG GCTGTTCGCC GGGCGCGGTT TCCTGTCGTT CTGTGGCACC
TACCTGTTTT CATCGTCGAC CTCGAAGGCG GTGCTGACGC TGCGCCGCGA GCTGCTCGGC
GCGGTGATGC GCGCCGACGC CAGCCTCTAC AACTCGCTGA GCCCGGGCGT GGCCGCCTCG
CGTGTCATCA ACGATCCGCA GAACGCCACC GCCACGCTCG GCGGCGCGGT GGTCACGGTG
CTGCGCAACG GCACCACGCT GGTGGCGATG CTCGGTTATC TGTTCTATCT GAACTGGCAG
CTCACGCTGG TGACCTTCGC GATCGCGCCG CTGCTGGCGC TGGTGGTGCG GCGGGTGCAG
CAGCGGGTGC ACCGACTCAG CCGGTCGTCG TACGAGCTGC AGCACCGGCT GATCGGCATC
GTCGACGACA TCACGCGCGC CTGGCGGGTG GTGCGCACCT TCGGCGCCGC CGAGTTCGAG
CAGAAGCGCT TCGACACCGA AGCCCAGCTG TTTCGCCGCG TCACGCTCAA GAGCGTGGCC
GCCGGCGCCA CCATGACGCC GCTGACGCAG ATCGTCGCCA GCATCGGCGT GGCGGTGATC
CTGACGCTGG CGCTGATCGA GGCGCGCCAG GGTCAGGCGA CGGTGGGCGA CTTCATCGCC
TTCATCACCG CGATGCTGCT GACGATCTCG CCGATGAAGC ATCTGACCGA CGTTTCCCAG
CCCATCACCT CCGGCCTGGT CGGCGCGGGG GCCTGCTTCG ACCTGATCGA CACCCCGCCC
GAGCCCGACC GCGGCAGCCG CGACGTGCCC ACCGACACGG CGGCGCGCGA CATCCGCTTC
GAGCGCGTGG CGCTGAGCTA TCCGGGCTCG GAACAGAAGG CATTGGCCGG CATCGACCTG
GCCATCCCCG AGGGCCGCAC GATCGCGCTG GTCGGGCCGT CGGGCTCGGG CAAGACCACC
GTCATCAACA CGCTGCTGGG TTTCGTCGCG CCCACCAGCG GCGCGGTGAC GCTGGCCGGC
ATCGACCTCC AGGAGATCCG CAAGGCCTCG CTGCGCAGCC AGTTCGCGGT GGTGTCGCAG
GACATCGTGC TGTTCGACGG CTCGATCGCC GACAACGTGG CCTATGTGCA GCCCAAGGAT
CCGGCGCGCA TCGAGCAGTG CCTGAAGGCA GCCAATCTGT GGGAGTTCGT GCAGCGCTCG
CCCGACGGCA TCGAGACGCT GGTCGGCAGC AACGGCAGCC GGCTGTCGGG CGGCCAGCGC
CAGCGCCTGG CGATCGCGCG GGCGCTCTAC AAGGACGCGC GCATCTGGGT CTTCGATGAA
GCCACCTCGG CGCTCGACAC CGAAAGCGAG CGCGTGGTGC AGCAGTCGAT CGAGCAGTGG
CACGGCAACA AGACGCTGAT CCTGATCGCG CATCGGCTCA GCACGGTGCG CAACGCCGAT
TGCATCTACG TGCTGGCCGA CGGCCGCGTG CTGGAGCAAG GCTCGCACGC CGAGCTGATG
ACACGCAGCG GGCTCTACGC CAGCATGGTG CAGGCCCAGG CGGTGGAATG A
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| Protein sequence | MQSKETARRL LSYLRPHKLE FGLGILCFFL SAAVEPLIPA LLKELLDQGF KPEQTIPTWI
MPVIVIGLFA GRGFLSFCGT YLFSSSTSKA VLTLRRELLG AVMRADASLY NSLSPGVAAS
RVINDPQNAT ATLGGAVVTV LRNGTTLVAM LGYLFYLNWQ LTLVTFAIAP LLALVVRRVQ
QRVHRLSRSS YELQHRLIGI VDDITRAWRV VRTFGAAEFE QKRFDTEAQL FRRVTLKSVA
AGATMTPLTQ IVASIGVAVI LTLALIEARQ GQATVGDFIA FITAMLLTIS PMKHLTDVSQ
PITSGLVGAG ACFDLIDTPP EPDRGSRDVP TDTAARDIRF ERVALSYPGS EQKALAGIDL
AIPEGRTIAL VGPSGSGKTT VINTLLGFVA PTSGAVTLAG IDLQEIRKAS LRSQFAVVSQ
DIVLFDGSIA DNVAYVQPKD PARIEQCLKA ANLWEFVQRS PDGIETLVGS NGSRLSGGQR
QRLAIARALY KDARIWVFDE ATSALDTESE RVVQQSIEQW HGNKTLILIA HRLSTVRNAD
CIYVLADGRV LEQGSHAELM TRSGLYASMV QAQAVE
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