| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2911 |
|---|
| Symbol | |
|---|
| ID | 6159994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3208901 |
|---|
| End bp | 3209836 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665690 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_001791941 |
|---|
| Protein GI | 171059592 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.363105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG CCTATTTCAG CCATCCCGAC TGCCGCGGCC ACGACATGGG CCCCGGCCAC
CCCGAGTGCC CGCAGCGGCT CGACGCGATC GAGGACCACC TGCTCGCCAC CGGCCTGGAC
ATCGCGCTCA CGCGCATGGA TCCGCCGCTG GTCGAGCACA GCGACCTGAT GCTGGCGCAC
GGCGAGGGTT ACCTGCTCGA GCTCGACGAG TTCATGCGCC AGGCCGCCGA GACCGGCGAA
CACCGTGCGC TCGACCAGGA CACCACCGTC TGCCCCGCCA CCCGCCAGGC GATGCTGCGT
GCCGCCGGCG CCGCGGTCGC GGCCACCGAT GCGGTGCTCG ACGGCAAGGT GGTCAACGCC
TTCTGCGCCA TCCGCCCGCC CGGTCACCAC GCCACGCGCA ACGAGGCGAT GGGCTTCTGC
TTCTACAACA ACGTGGCGGT GGCGGCACGC CATGCGCTCG ACGTGCGCGG CCTGGAGCGG
GTGGCGATCA TCGATTTCGA CGTGCACCAC GGCAACGGCA CCGAAGACAT CGTGGCCGGC
GACGACCGCA TCCTGATGGT GAGCTTCTTC CAGGATCAGC TCTACCCCTT CAGCGGCGGC
ATCCCGATGG GGCCGAACAT GGTCAATCTG GCGATCCCGG CCTACACCCG CGGCGCCGAG
ATCCGCGAGC TGATCGAGGC CAACTGGATG CCTCGGCTGG AGGCCTTCGA GCCCCAGATG
ATCTTCATCT CGGCCGGCTT CGATGCCCAC CGCGAAGACG AGCTCGGCCA GCTCGGCCTG
GTCGAGGCCG ACTACGCCTG GATCACGCAG CGCATCGTCG ACGTGGCCGA GCGCCACAGC
GGCGCTCGCA TCGTCTCGTG TCTCGAGGGC GGCTATTCGC TCAGCTCGCT GGCGCGCAGC
GTGGCGGCGC ATCTGCGGGT GCTGGCGGGG GTCTGA
|
|---|
| Protein sequence | MSTAYFSHPD CRGHDMGPGH PECPQRLDAI EDHLLATGLD IALTRMDPPL VEHSDLMLAH
GEGYLLELDE FMRQAAETGE HRALDQDTTV CPATRQAMLR AAGAAVAATD AVLDGKVVNA
FCAIRPPGHH ATRNEAMGFC FYNNVAVAAR HALDVRGLER VAIIDFDVHH GNGTEDIVAG
DDRILMVSFF QDQLYPFSGG IPMGPNMVNL AIPAYTRGAE IRELIEANWM PRLEAFEPQM
IFISAGFDAH REDELGQLGL VEADYAWITQ RIVDVAERHS GARIVSCLEG GYSLSSLARS
VAAHLRVLAG V
|
|---|
| |