| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2909 |
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| Symbol | |
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| ID | 6160239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3204161 |
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| End bp | 3208090 |
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| Gene Length | 3930 bp |
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| Protein Length | 1309 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665688 |
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| Product | type IV fimbrial biogenesis protein PilY1 |
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| Protein accession | YP_001791939 |
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| Protein GI | 171059590 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.940828 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATCC GCCCCACAAG CCCTGCAGCG CGCGGCGCCC GGCTCACATC GAAGGCCGGG
CCACGGGCCC TGCGCAGCCC GATCCTGTCC GCCGTGCTGC TGGTGCTGCT GGGCAGCACC
TGGGCCGCCA CGCCCGACAT CTCGAACGTG CCGCTGAGCT CGACGTCGAC CACGACGGCC
AAGCCCAACA TCATGTTCAT CCTCGACGAC TCGGGCTCGA TGGCCTGGGA CTTCATGCCC
GACGAGCTCG ACGACAACAA CGACCAGGTC GGCGACAACG TCTACGGCTT CAGGTCGGCG
CAATGCAACG GCGTGGCCTA CAACCCCGAC ATCACGTACA CCCCACCGGT CCGGATCGAC
CCGACCACCG GCGCGGTCAG CAACTACGCC GACGCCAGCT TCACGGCGGC GCGCTCGGAC
GGCTTCAGCA CCTCATCGGG TGTCACAGAT CTGACGGGCC GCGTCTACTA CCACTACCTC
GGCAGCGAGC CCGCGCTGTC GTGGCGCTAC GGCAGCAACG GCACGGTCGA CAGGACCACC
ACGTTCTTCA CCGAGTGCAT GACCGCGATC CCCGCTGACG GGGCCGGCAA CGCGCGCTTC
GAACAGCGCA CGATGAGCAA CGCATCGACC GATGCACAGA ACTACGCCAA CTGGTATTCC
TACTACCGCA AGCGCCAGCT GACCATGCGC TCGGCGGCAG GCCGGGCCTT TGCCGACCTG
TCGAATGCCT ACCGCGTCGG CTTCACCAGG ATCAGCCAGA CGGGTGTCAC CGGCACCAGC
TTCCTGAACG TCGGCGACTT CGACACGGCA CAGAAAACCA GCTTCTTCAA CCTGCTCTAC
ACCAGCGGCA TCAGCGGCAG CACGCCCTTG CGCGGCGCAC TCTCCAAGGT CGGGCGCTAC
TACGGCAACG TGATCGCCGG CCAGACCGAC CCGGTGCAGT ACTCGTGCCA GCGCAACTAC
GCCGTGCTGT CCACCGATGG TTACTGGAAC ACCGGAAACG AGAGCACCAC CTACCGGGCG
CTGGCGCTCG ACGGCACCAC GCTCGTCGGC CAGCAGGACG GCACCGAAGT CCGGCCGATG
AAGGACGGCA GCACCGTGAC CGTCACGCGC GTGACGATCT CGGGCTCGGT CGACCGCACG
CAGACGATCC TGGATCGGCG CACCGACATC ACGCTGCGGC GCACCGCCAA CACCATCACC
AACAACAGCT GCAACTCCGG CAACGGCCGG CGCGTCTCCC AGCAGGGTCA GCGCCGGATC
GACACCGCAT CGTTCCAGCG CACGCTCGTC CAGGACGTCA CCAACCGGAC CACCGTCACG
CAGGTGACCA CCAACGGCAT CCCCGCCAAC CCGACCTCGA CCACCACGGC CAACGCCGCG
CAGGTCAGCG CGACCGACGG CAGCGTCACG GCCACGACCA CCGGCACCTG GAACAACAAC
GGCGGCTCGA ACACCAACTG CATTGCCCGG TCGAGCCTGC CGACCGGCTG GAGCACCGGC
ACGGTGTACT ACACACCGGG CGTCGACGGC ACCGAGCTGA GCCGCAACAC GGTCACCCTC
GCCACCGGCA CGCCGACCGT GCTGAGCACG GGCCCCCTGG CCGACGCCGG CACGACGGAG
ACCACCGCCA CCACCGCCGG CGACAGCAAC TCGCTGGCCG ACATCGCCCA GTACTACTGG
AAGACCGACC TGCGCCCCGA CATGGTCGAC AACGTGCCCA CCAGCGGTGA CGACAGCGCA
GCGCACCAGC ACATGACCAC CTTCACGATC GGCCTCGGCC TGAAGGGCAC GCTCAGCTAC
GACCGCAACT ACCTGACGCA GACCACCGGC GACTTCGCCG ATCTGCGCAG CGGCGCGAAG
AACTGGCCGG TGCCACGCGG CACCACCGGC GGCAGCGAAA ACGCCACCCA CATCGACGAC
CTCTGGCACG CCGGCGTCAA CGGCCGCGGC CAGTACTTCT CGGCGGCCGA TCCGAACCAG
CTCGACGACG CCATCTCGAC CACCCTGAGC GCGATCCGTC GGGTGACCGA ATCCGGCGCA
GCGGCGGCCG CCAGCACGCT CACGCCCGTG ACCGGCGACG ACTGGGTCTT CCTGCCCAGC
TTCACCACGA TCGACTGGAC CGGCGACCTG CGCGCCTTCA AGTTCACCTT CAACAGCGCC
AATGAACTGG TCGCGCCCAA CACCGCCGCC GGCAACGAGA TCTGGAGCGC CGGCAACCAG
CTGCGGGCGC GCACATCGTC ACGCCGCATC CTGTTCAACA ACGCGGGCAC GCTCGGGGAC
TTCACCTACG ACAACCTGAC CGCGGCCGGC CAGGGCGCGC TGTTCGACAA CCGCTGCGGC
AGCGCCCTGA GCTCGCCCGC GACCAACCTG AGCCAGTGCG CCACCCTGAC CCCCGCCGCA
CTGGCCAAGG TCACGGGGGC CAATCTGGTC AACTTCCTGG CCGGTGACGC CACGCTCTAC
CAGAGCGCCG CCGATGTCGA CAACCAGGTC TTCCGCACCC GCAACGGGCT GCTGGGCGAC
TTCGTCAACG CCTCGCCGGT GTATGTGGGC AAGCCGCCGT TCCGCTACGC GGACGCCGAC
TACGCCAGCT TCGTCAGCGC ACAGGCCAAC CGGACCAAGG TGGTCTACGC CGCCGCCAAC
GACGGCATGC TGCACGCCTT CAAGGTCGGC ACCGGCGCCG GCGACGGCAC CGGCGGTGCC
GAGCTGTGGG CCTTCGTGCC GAGCGCGGTG ATGCCCGAGA TGTGGCGCCT GGCCAGCGAA
AGCTACGACA CCGACCACCG CTTCTTCGTC GACGCCACGC CCAACGTCTC GGACATCTAC
GACAGCGCCG CCGGACGCTG GCGCACCATC CTGGTCGGCG GCCTCGGTGC GGGCGGGCGC
AGCTACTACG CGCTCGACGT GACGACGCCG GAGTCTCCCG TGCTGCTGTG GGAATTCAGC
GACGCCAACC TCGGCCTCAC CTACGGCAAC CCGGTGGTCA CGAAGGATGC GACGGGCACC
TGGGTGGTGG TGTTCACCTC CGGCCTCAAC AACAACGCCG GCTCCGGCGA CGGCGTCGGC
CGCCTCTACG TGGTCAACGC CGTGACCGGC GCGCTGGTCC GCACGGTCGC CACCAGCGCC
GGCGATGTCG GCACCCCCAG CAACCTGGGC CGCCTGAACG CCTGGATCAA CGCCGACTCC
GACAACACGG CGCTGCGTTT CTACGCCGGC GACATGCTCG GCAACGTCTG GCGCTTCGAC
CACGACGACC GCCTGGCCCC GGCCGGCCGT GAAGCCGTGC TGCTGGGCAA GGCCCAGAGC
GCCGACGGCA CGGCCCAGCC GATCACCGGC AAGCTGGTGC TGACCGAAGC CAGCATCAAC
GGCCTGCAGA CGCCGGTGGT GAGCTTCGGC ACCGGCCGCC TGCTCAATCT CGATGACCTC
ACCAACACCA CCCTGCAAAG CATCTACTCG ATCAAGGACA CCCTCGGCGA AACCGGCGTG
GGCGTGTTGC GCGACACCGG CGCCGCCCTG GTGCAGCAGA CCCTCAACAG CAGCCGCGGC
ATCGACACCG TCGCGCCGGT GGACTGGGGC ACGAAGAACG GCTGGTACGT CGACCTCACG
GTGTCGAGCA AGGAGCGCGT GCACCTCGAC GGCGTGCAGC TGGCCTCGGG CGTGCTGGCC
TTCGCCTCCA CCGTGCCGAC CGCCGACGCC TGCTCGCAAG GCGGCGTCTC CTACCTCTAC
CAGTTCGACC TGACCAACGG CAACGTGCTC GGCACGTCGT CGTTCACCAC CATGATCGTC
GGCCTGAACC GGGTCATGAG CATCAACGGC AAGGTCAGCG CCATCGTGAC CACGCAGGAC
CAGAAGACCA CGCTGACGGC CGGCGGCGGC GGCTCGGTGT CGCCGGGCAA CACCGTCAAG
CGCTCGTCGT GGCGCGAACT GACGGACTGA
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| Protein sequence | MSIRPTSPAA RGARLTSKAG PRALRSPILS AVLLVLLGST WAATPDISNV PLSSTSTTTA
KPNIMFILDD SGSMAWDFMP DELDDNNDQV GDNVYGFRSA QCNGVAYNPD ITYTPPVRID
PTTGAVSNYA DASFTAARSD GFSTSSGVTD LTGRVYYHYL GSEPALSWRY GSNGTVDRTT
TFFTECMTAI PADGAGNARF EQRTMSNAST DAQNYANWYS YYRKRQLTMR SAAGRAFADL
SNAYRVGFTR ISQTGVTGTS FLNVGDFDTA QKTSFFNLLY TSGISGSTPL RGALSKVGRY
YGNVIAGQTD PVQYSCQRNY AVLSTDGYWN TGNESTTYRA LALDGTTLVG QQDGTEVRPM
KDGSTVTVTR VTISGSVDRT QTILDRRTDI TLRRTANTIT NNSCNSGNGR RVSQQGQRRI
DTASFQRTLV QDVTNRTTVT QVTTNGIPAN PTSTTTANAA QVSATDGSVT ATTTGTWNNN
GGSNTNCIAR SSLPTGWSTG TVYYTPGVDG TELSRNTVTL ATGTPTVLST GPLADAGTTE
TTATTAGDSN SLADIAQYYW KTDLRPDMVD NVPTSGDDSA AHQHMTTFTI GLGLKGTLSY
DRNYLTQTTG DFADLRSGAK NWPVPRGTTG GSENATHIDD LWHAGVNGRG QYFSAADPNQ
LDDAISTTLS AIRRVTESGA AAAASTLTPV TGDDWVFLPS FTTIDWTGDL RAFKFTFNSA
NELVAPNTAA GNEIWSAGNQ LRARTSSRRI LFNNAGTLGD FTYDNLTAAG QGALFDNRCG
SALSSPATNL SQCATLTPAA LAKVTGANLV NFLAGDATLY QSAADVDNQV FRTRNGLLGD
FVNASPVYVG KPPFRYADAD YASFVSAQAN RTKVVYAAAN DGMLHAFKVG TGAGDGTGGA
ELWAFVPSAV MPEMWRLASE SYDTDHRFFV DATPNVSDIY DSAAGRWRTI LVGGLGAGGR
SYYALDVTTP ESPVLLWEFS DANLGLTYGN PVVTKDATGT WVVVFTSGLN NNAGSGDGVG
RLYVVNAVTG ALVRTVATSA GDVGTPSNLG RLNAWINADS DNTALRFYAG DMLGNVWRFD
HDDRLAPAGR EAVLLGKAQS ADGTAQPITG KLVLTEASIN GLQTPVVSFG TGRLLNLDDL
TNTTLQSIYS IKDTLGETGV GVLRDTGAAL VQQTLNSSRG IDTVAPVDWG TKNGWYVDLT
VSSKERVHLD GVQLASGVLA FASTVPTADA CSQGGVSYLY QFDLTNGNVL GTSSFTTMIV
GLNRVMSING KVSAIVTTQD QKTTLTAGGG GSVSPGNTVK RSSWRELTD
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