| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2907 |
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| Symbol | |
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| ID | 6160237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3202286 |
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| End bp | 3203452 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641665686 |
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| Product | type IV pilus assembly protein PilW |
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| Protein accession | YP_001791937 |
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| Protein GI | 171059588 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.952407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCTGC ATCCAAGCGC CCGCACACGC CGCCCGCTGC TCGCGCGCCA GCGCGGCGTC
ACCCTGGTCG AGCTGATGGT CGGCCTGGTC ATCGGCCTGC TCGCCACCCT CGTGATCGCG
CAGGTGGCGA TCGTCTTCGA GGGCCAGAAA CGCAGCACCA CCGGCGGCTC CGACGCCCAG
CTCAACGGCG CGCTGGCGCT GCAGACGCTG CAGCGCGACA TCCAGCTCAG CGGCTACGGC
ATCGCCACCG GCGGCGGCGC GGGCTGCGAA TTGCGCGGCT CGCGCAATGG CACGGTGCCG
CCGTGGAATG GCCAGCCGAT GGTGGCGGTG CGCATCGTCG ACGGCACCGA CGTCGCCACC
GGCTCGCCCG ACTCGCTGTT CATGCTGTTC AGCGGCAAGG CCGACTCGTC GTTCTATTCG
CTGCCGATCC GCGTCTATCA GAACCACCGC CGCGACGGCA GCGAGTTCGT GCTCGACGAG
CGCACCAACA TCGGCACGGC GCAGGGCGAC ATGATGGTGG TGGTGCCCAC CCCCACCCCG
CTGCCCAGCG CCAGCCAGGT CACGCCCAGC TGGTGTTCGG TGTTCAACAT CAGCGTCGAC
CCGGCCACCA CGGACAACCG CATCGTCCAC CAGCCCGGCA CCGACGGGCC GTGGAACCAG
GACAGCACCA ACACCGTCTT CCCCGGCGCC GTCAACGCCG ACACCAGCTA CGCCGCGGGC
AGCCACCTGG TCAACCTGGG CACCATGACC TACCGCGAAT ACAGCCTCAG CACCAGCACC
ACCGGCAGCG CGCTGCAGAT GCGCTCGGTC GACAACAACA CCGCGCAGTG GGTCACGGCC
GACGCGCTGT TTCCGCAGAT CGTCAACCTG CAGGCGGTCT ACGGCCGCGA CACCTCGGTC
ACCCGCGACA ACGTCGTCGA CGCCTGGGAC AACACCGCGC CGACCACCGC CGACGGCTGG
TCGCGCGTGA TCGCGGTGCG CATCGCGCTG GTGGCGCGCA GCAACCAGCG CGAGAAAGAG
ATCGTCACCG TCACCGAACC CACCTGGATG CCCGACGGCG TGAACACGCA GCCCCTCAAG
GTCGACCACC TCGACAGCTG GCAGCACTAC CGCTACAAGG TCTTCGAGGC CGCGGTGCCG
CTGCGCAACA TGCTCTGGCA ATCGTGA
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| Protein sequence | MNLHPSARTR RPLLARQRGV TLVELMVGLV IGLLATLVIA QVAIVFEGQK RSTTGGSDAQ
LNGALALQTL QRDIQLSGYG IATGGGAGCE LRGSRNGTVP PWNGQPMVAV RIVDGTDVAT
GSPDSLFMLF SGKADSSFYS LPIRVYQNHR RDGSEFVLDE RTNIGTAQGD MMVVVPTPTP
LPSASQVTPS WCSVFNISVD PATTDNRIVH QPGTDGPWNQ DSTNTVFPGA VNADTSYAAG
SHLVNLGTMT YREYSLSTST TGSALQMRSV DNNTAQWVTA DALFPQIVNL QAVYGRDTSV
TRDNVVDAWD NTAPTTADGW SRVIAVRIAL VARSNQREKE IVTVTEPTWM PDGVNTQPLK
VDHLDSWQHY RYKVFEAAVP LRNMLWQS
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