| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2904 |
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| Symbol | |
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| ID | 6160234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3200674 |
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| End bp | 3201180 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641665683 |
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| Product | putative type 4 fimbrial biogenesis transmembrane protein |
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| Protein accession | YP_001791934 |
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| Protein GI | 171059585 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4968] Tfp pilus assembly protein PilE |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.3004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCTG CCGACCACCG CTCCCCCCGT TCGACCGGTC CGCTCGTGAC GCACCCGAGC
CCCGGCACCG GTCGGCGGCG CAGCCGGGGC TTCACGCTGA TCGAGCTGAT GATCGCGGTG
GCCATCGTCG GCATCCTGGC CGCGGTGGCG CTGCCCTCGT ACACCGACTA CCTGCGCCGC
GGCCGCATCC CGGAGGCCTT CACCTACCTG AGCAACTACC GGGTGCAGAT GGAGCAGTAC
TACCAGGACA ACCGCAACTA CGGCACCGGC ACCGACTGCG CCGGCGGCGC CATCCTCAGC
GCGCCGGCGG GCACCAAGTT CTTCACCTAC AGCTGCGCGA TCACCGACAG CGGCCAGGGT
TACGACCTGA CCGCCACCAG CACCGCCGAA CTCAACAGTG CCCACGTCTA CACCATCGAC
GAGGCCAACA ACCGCGGCAC CACGGCATTC AAGGGCGAAA CCGGCCTCAC CAACGCGTGC
TGGCTGGTCA GGGGCAACGA ATGCTGA
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| Protein sequence | MPSADHRSPR STGPLVTHPS PGTGRRRSRG FTLIELMIAV AIVGILAAVA LPSYTDYLRR
GRIPEAFTYL SNYRVQMEQY YQDNRNYGTG TDCAGGAILS APAGTKFFTY SCAITDSGQG
YDLTATSTAE LNSAHVYTID EANNRGTTAF KGETGLTNAC WLVRGNEC
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