Gene Lcho_2894 details

Gene Information

• Locus tag: Lcho_2894
• ID: 6160206
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 3189500
• End bp: 3190066
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641665673
• Product: ECF subfamily RNA polymerase sigma-24 factor
• Protein accession: YP_001791924
• Protein GI: 171059575
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.00664884
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

TTGGCCGCCG ATCAAGAACT GTCAGACTTT CTCCAGAACG TCGAAAAGCG CGCCTTCAAA 
CGCACCTTCT ATGCGGTGCG CGACGAAGAC GCGGCACTGG ACATCGTGCA AGACGCGATG 
ATCCGCCTGT CCCAGCGCTA CGCCGACCGC CCCACCGCGG AGTGGCCGAT GCTGTTCCAG 
CGCATCCTGT CGAACGCGAC GATGGACTGG TTCCGCCACC AGAAAGTGCG CAAGGGCGTT 
CTGCAGGTGT TCTCGGATTT CGAGCCCGCC GGCGGCGATC CGGATTTCGA TCTGCTCGAA 
ACGCTCGAGA TGCTGTCGAG TTCCGAGGGC ACGGAAAGCT CGGCCGATGC CGCACAACGC 
TCACAGACGC TGCAGATCAT CGAAGGCGAG GTGGCCAAGC TGCCAACCCG TCAACGCGAA 
GCGTTTCTGA TGCGTTACTG GGAGGAAATG GATGTTGCCG AAACTGCCGG CGCCATGGGA 
TGCTCTGAAG GCAGTGTCAA GACACACTGC TCCAGGGCGG TTCATGCGCT GGCAAAAGCA 
TTGAAGCTCA AGGGAATTTC GCTGTGA 

 

Protein sequence

MAADQELSDF LQNVEKRAFK RTFYAVRDED AALDIVQDAM IRLSQRYADR PTAEWPMLFQ 
RILSNATMDW FRHQKVRKGV LQVFSDFEPA GGDPDFDLLE TLEMLSSSEG TESSADAAQR 
SQTLQIIEGE VAKLPTRQRE AFLMRYWEEM DVAETAGAMG CSEGSVKTHC SRAVHALAKA 
LKLKGISL