| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2888 |
|---|
| Symbol | |
|---|
| ID | 6160159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3181121 |
|---|
| End bp | 3182662 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641665667 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_001791918 |
|---|
| Protein GI | 171059569 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0110293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATC AACTCATCAT TTTTGACACC ACCTTGCGCG ACGGCGAGCA GTCGCCCGGT
GCGTCGATGA CCCGTGACGA GAAGCTGCGC ATCGCACGCC AGCTCGAGCG GCTCAAGGTC
GACGTCATCG AGGCCGGTTT TGCTGCTTCG TCGAACGGCG ATTTCGAGGC CGTCAAGGCG
ATCGCCGATG TCATCAAGGA CTCGACCATC TGCTCGCTGG CACGTGCCAA CGACCGCGAC
ATCTCGCGCG CCGCCGAGGC GCTGCGCGGT GCCAACCGGG CGCGCATCCA CACCTTCATC
GCCACCAGTG CGCTGCACAT GGAGAAGAAG CTGCGCATGT CGCCCGACGA GGTGCTCGAG
CAGGCCAGGC TGTCGGTGCG CTTTGCCCGC AACCTGTGCG GCGACATCGA GTTCTCGCCC
GAGGACGGGT ATCGCTCCGA TCCGGATTTC CTGTGTCGCG TGCTTGAGGC GGTGATCGAC
GAAGGCGCGA CCACGCTCAA CATCCCCGAC ACGGTGGGCT ACGCGATCCC CGAGCTCTAC
GGCAACTTCA TCCGCAATCT GCGCGAGCGC GTGCCCAACT CCGACAAGGC GATCTGGTCG
GTGCACTGCC ACAACGACCT CGGCATGGCC GTGGCCAACT CGCTGGCGGG TGTCAAGATC
GGCGGGGCGC GTCAGGTCGA GTGCACCATC AACGGCCTTG GCGAGCGCGC CGGCAACTGC
TCGCTCGAGG AGGTCGTGAT GGCGGTGAAG ACCCGGCGCG ACTACTTCGG CCTCGACCTG
CGGGTGGACA CCAGCCAGAT CGTGCCGGCC TCGCGCATGG TGGCGCAGAC CACCGGTTTC
GTCGTCCAGC CCAACAAGGC GGTGGTGGGG GCGAACGCTT TCGCCCACGC ATCGGGCATC
CATCAGGACG GCGTGCTCAA GGCGCGCGAC ACCTACGAGA TCATGCGTGC CGAAGACGTC
GGCTGGTCGG CCAACAAGAT CGTGCTGGGC AAGCTGTCGG GCCGCAACGC CTTCAAGCAG
CGACTGCAGG ATCTGGGCAT CGCCCTCGAA TCCGAGGCCG AGGTCAATGC CGCGTTCATG
AAGTTCAAGG ACCTGGCCGA TCGCAAGAGC GAGATCTTCG ACGAGGACAT CCTGGCCCTC
GTCAGCGACG AGCAGAGCGA CAACCAGGCC GAGCACTACC GGCTGCTGGC CTTGTCGCAG
CATTCCGAAA TGGGTGAGCG CCCGCATGCC GAGGTCGCGT TTGCCGCGGG TGACGTGGAA
CACCACGCCC GGTCCGATGG CAACGGCCCG GTCGATGCCA GCATCAAGGC GATCGAGTCG
AAAGTGGGCA CGGGGGCCGA ACTGCTGTTG TATTCGGTGA ACGCCATCAC ATCCGGCAGC
ACCGAGTCGC AGGGTGAGGT GACGGTTCGC CTCCAACTGG GCGGGCGCAT CGTCAACGGC
GTGGGGGCCG ATCCCGACAT CGTGGTGGCC TCGGCGAAGG CGTACCTGGC CGCGTTGAAC
AAGCTGCACA GCAAGGCCGA ACGCGTGGCT GCGCAGGGTT GA
|
|---|
| Protein sequence | MSDQLIIFDT TLRDGEQSPG ASMTRDEKLR IARQLERLKV DVIEAGFAAS SNGDFEAVKA
IADVIKDSTI CSLARANDRD ISRAAEALRG ANRARIHTFI ATSALHMEKK LRMSPDEVLE
QARLSVRFAR NLCGDIEFSP EDGYRSDPDF LCRVLEAVID EGATTLNIPD TVGYAIPELY
GNFIRNLRER VPNSDKAIWS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNC
SLEEVVMAVK TRRDYFGLDL RVDTSQIVPA SRMVAQTTGF VVQPNKAVVG ANAFAHASGI
HQDGVLKARD TYEIMRAEDV GWSANKIVLG KLSGRNAFKQ RLQDLGIALE SEAEVNAAFM
KFKDLADRKS EIFDEDILAL VSDEQSDNQA EHYRLLALSQ HSEMGERPHA EVAFAAGDVE
HHARSDGNGP VDASIKAIES KVGTGAELLL YSVNAITSGS TESQGEVTVR LQLGGRIVNG
VGADPDIVVA SAKAYLAALN KLHSKAERVA AQG
|
|---|
| |