Gene Lcho_2886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2886 
Symbol 
ID6160157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3179128 
End bp3179898 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content65% 
IMG OID641665665 
ProductIclR family transcriptional regulator 
Protein accessionYP_001791916 
Protein GI171059567 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.187395 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAAGA AAGACGGTCA CACCCCGACG ATCCAGGTAC TGGAGCGGGT GTTCCATCTG 
CTGGACGTGC TGGCCACGCA CCAGGATCCG GTATCGCTCA AGCAGATCAG CGAGCATACC
GGGCTGCATC CGTCAACAGC CCATCGCATC CTCAACGACC TGGTGGCGGG GCGCTTTGTC
GACCGCCCCG AGGCGGGCAG CTACCGGCTG GGCATGCGCT TGCTGGAACT CGGCAACCTC
GTCAAGGCCA GGCTCGACGT GCGCGACGCG GCACTGGGGC CGATGCGAGA ACTCCACAAG
CTCACGCATC AGCCCGTCAA CCTGTCCGTG CGGCAAGGCG ACGAGATCGT CTACATCGAA
CGCACCTATT CCGAGCGCTC CGGCATGCAG GTGGTGCGCG CCGTCGGTGG CCGGGCGCCA
CTGCATCTGA CATCGGTCGG CAAGCTCTTC CTGGCCCACG ACGACCCGCA ACGGGTTCGT
GCCTACGCCA CGCGCACCGG CCTGGCCGGC CACACGCGCA ACAGCATCAC CGATCTGCCG
CAACTCGAGC GTGATCTCGC CAAGGTCAGG CAGACCACGC TGGCACGGGA CAACGAAGAA
CTGGAACTGG GCGTGCGCTG CATGGCAGCA GGCATCTTCG ACGATCAGGG CCGGCTGATC
GCGGGGTTGT CGATTTCGGC ACCGACCGAC CGCCTTGAAG AAGGCTGGAG CGAACGACTC
CGGGAAACGG CCAGCCAGAT CTCGAAGGCC CTGGGCTATC TGCCGGCCTG A
 
Protein sequence
MIKKDGHTPT IQVLERVFHL LDVLATHQDP VSLKQISEHT GLHPSTAHRI LNDLVAGRFV 
DRPEAGSYRL GMRLLELGNL VKARLDVRDA ALGPMRELHK LTHQPVNLSV RQGDEIVYIE
RTYSERSGMQ VVRAVGGRAP LHLTSVGKLF LAHDDPQRVR AYATRTGLAG HTRNSITDLP
QLERDLAKVR QTTLARDNEE LELGVRCMAA GIFDDQGRLI AGLSISAPTD RLEEGWSERL
RETASQISKA LGYLPA