| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2880 |
|---|
| Symbol | |
|---|
| ID | 6159853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3170310 |
|---|
| End bp | 3171410 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641665659 |
|---|
| Product | AFG1 family ATPase |
|---|
| Protein accession | YP_001791910 |
|---|
| Protein GI | 171059561 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1485] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.549688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCG TCACCGAGCT CTATCACCAG ACCCTGATCG AGCGGGGTTA CCAGGCCGAT
CCGGCCCAGC TGCGCGCCGT CGCCGCATTG CAGCGCTGCC AGGACGAGTG GGCGGCCTAC
AAGTCGCGGC GCAGCAATGC GCTGACCAAG GCGCTGGTGC GCCCGCCGAT CCCGCGCGGC
GTCTACATGT ACGGCGGGGT GGGGCGCGGC AAGAGCTTCC TGATGGATGC GTTCTTCCAG
GCCGTGCCGC TGACGCGCAA GACCCGGCTG CACTTTCACG AGTTCATGCG CGAGGTGCAC
CGCGAGCTGC AGGACCTCAA GGGCGTGCAG AACCCGCTCG ACGAGCTCGG CCGGCGCATC
GCGCGGCGTT TCCGGCTGAT CTGCTTCGAC GAGTTCCACG TCGCCGACGT GACCGACGCG
ATGATCCTGC ACCGGCTGCT CGACGCGCTG TTCCGCAATC GCGTCTCGAT CATCACGACG
TCGAACTTCC ACCCAGACGG GCTCTATCCG AACGGCCTGC ACCGCGACCG CATCCTGCCC
GCGATCGCGC TGCTGAAGGC GCAGATGGAG GTCATCAACG TCGACAACGG CACCGACTAC
CGCCGCCGCA CGCTCGAGCA TGTGAAGCTG TACCACACGC CGTTGGGCCC GCAGGCCGAT
GCGGCGCTGG GCGCGGCTTT CGACGAGCTG GCCGAGGCGC GTGACGAGGA GCCGGTGCTG
CAGATCGAGC AACGCAGCAT CCAGGCTCGT CGCAAGGCCG GCGGCGTGGT GTGGTTCGAT
TTCAAGGCGC TGTGCGGCGG GCCGCGTTCT CAGAACGACT ACCTCGAGCT GGCGACGCAG
TTCCACACGC TGATCCTGTC GAACGTGCCG TTGATGCCAC CCAAGCTGGC GTCCGAGGCA
CGCCGTTTCA CCTGGCTGGT CGACGTGCTG TACGACCGTC GCGTCAAGCT GATCGTCTCG
GCCGCGGTGC CGCCGGAAGC GCTCTACACC GAAGGCCCGC TGGCGCACGA GTTCCCGCGC
ACGGTCTCGC GCCTGACCGA GATGCAGTCG GCCGAATTCC TGGCGCTCGA GCGGCGCGAC
GTCGACACCT CGCTGACCTG A
|
|---|
| Protein sequence | MTSVTELYHQ TLIERGYQAD PAQLRAVAAL QRCQDEWAAY KSRRSNALTK ALVRPPIPRG
VYMYGGVGRG KSFLMDAFFQ AVPLTRKTRL HFHEFMREVH RELQDLKGVQ NPLDELGRRI
ARRFRLICFD EFHVADVTDA MILHRLLDAL FRNRVSIITT SNFHPDGLYP NGLHRDRILP
AIALLKAQME VINVDNGTDY RRRTLEHVKL YHTPLGPQAD AALGAAFDEL AEARDEEPVL
QIEQRSIQAR RKAGGVVWFD FKALCGGPRS QNDYLELATQ FHTLILSNVP LMPPKLASEA
RRFTWLVDVL YDRRVKLIVS AAVPPEALYT EGPLAHEFPR TVSRLTEMQS AEFLALERRD
VDTSLT
|
|---|
| |