| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2873 |
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| Symbol | |
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| ID | 6159748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3162128 |
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| End bp | 3164338 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665652 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001791903 |
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| Protein GI | 171059554 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA TGCCCGACAC ACCCGACACG ACTGCGGCCA CGCCCTCGTC CGACTCGACC
GCTGCACCTA AGCGTCGCCG CACCCGCAAG TCTGCGGACG ACACGGTCCC CGCGCTCGAC
AGCAGCGCTG CGCAGGCGGC TGAGCTGCCG GTCGAGACGC CGGTCGAGCA GGCGCCCGCT
GCTCAGGCGC CGGCCGAGAA GAAGCGCAGG GCTGCGCGTG CGTCGGTCGA GCCTGTCGCT
GCTGCGGCCG AGGCGCCTGC TGAAGGCGTT GCCGCCCCGG CCCGCAAGCC GCGTGCGCCG
CGGCGGGTCG ACGCACCGAG CGCCGATGCG TCGCCTGTCG AGGTGGTGGC TGCGCCTGAC
GCCGTCGCGC CGGCTCCCGT GGCCGAGGCG TCGGTCCAGT CGGACGAGGG CGCCGATGCG
GCAGTCCGTC CGGCTCGTCG CTCGCGCGGC CGCAAGACGC AAGGCGATGC CGTCGCCGTG
GCGGCTGCCG ATGAGGCGTC GGCGGCTCCG TCCGGCGACG CGCCGACAGG CGACCGCGTC
GAGGCCGCTG TCGAGCCGGG CGAAACGTCG CAGTCCGGTG CGGTCGTCCA GGCCCCCGAG
CGCGACACGC GCCGCCGCGA TCGCCGCCAG AAGCAGCGTG AAGAGCGCCC GCGCGCGGTC
GAGGCCGAGG CGGCTCCGGC GATCTTCACG CTGGGCGAGA TGCCCGAAGG CGAGGCCGGT
GCTGCCGACG CCGCGCTTGC GCTGCCGGTC GATGCCGGGC AGTTGTTCGC TGCCGTGCTG
TCGGGCGACT ACGACGTCGA GGACGCCGAA GAGGAAGAGG TTTCCGCCGA TCCGGGCAAG
CGCGTGCTGC GTCCCGAGCC CGAGGCGCCC AAGCTGCACA AGGTGCTGGC GCAGGCGGGT
GTCGGCTCGC GCCGCGACAT GGAACAGCTG ATCCAGGAGG GTCAGGTGTC GGTCAACGGC
GAGGTGGCGC ACATCGGCAT GCGCATCGCC CAGGGCGACC AGATCAAGAT TGCCGGCCGG
CCGATCAAGG TGCGCATCGC GCCGCCGCCG GCACGTGTGC TGGCCTATCA CAAGCCGGTC
GGCGAGGTGG TCACGCACCA CGACCCCGAA GGCCGGCCGA CCGTGTTCCG CCGGCTGCCG
CGCCTGCCGG TCGGCAAGTG GCTGTCGGTG GGGCGTCTGG ACATCAACAC CGAAGGCCTG
CTGCTGTTCA CCAACTCGGG CGAACTGGCC AACCAGCTGA TGCACCCGCG TTTCGGCGTC
GAGCGCGAGT ACGCGGTGCG CGTGCTGGGT TCGCTCGACG AGGCCGCGCG TGCGCGCCTG
CTCGAAGGTG TCGAGATCGA GGGCCAGCGG GCCATGTTCA AGTCGATCGA TGACGGCGGC
GGCGAAGGCA TCAACCACTG GTATCGCGTG GTGATCACCG AAGGCCGCAA CCGCGAGGTG
CGCCGGCTGT TCGATGCGGT CGGCCTGACG GTCAGCCGCC TGATCCGCAT CCGCTACGCC
ACCGTGGTGC TGCCGCGTGG CCTCAAGCGC GGCGTCTGGG TCGAACTCGA CGACAACGAC
GTGCGCCAGA TCCGCCAGAT CGCCAACGGC CCGCGTGCCG AGCGTGGCGA GCGCGAAGAA
CGGGGCCCGC GTGCCGACCG TGCAGAGCGT GGCCCGCGTG ACGGCCAGCA GCCCGGCCGC
GGCGCCGGCA AGGGCAAGGG TGGCGGCCAA GGCCAGGGCC AGGGTCCGCA GATGTCCCAG
GGCGGCCAGA ACGCGCCGGG TGGACGTGGC AATCAGCAGC GCGGCAACAA GCCGGTGGGC
AAGGGCGGGC AGGGTGGACA GGGCTTCGAG CGCCGCGGTC CGGACGGCCG GCCCGGCGCG
CCGCGCAGCG GGGGCGCCGA GTGGCGCGAC GAGCGCCCGG CGCGCGACGG CAACGTCAGT
CGTGAGCCGC CGCGCGAGCG CGAAGACGGC GATTTCGGCG ACGATCCGCT GCACATCCCG
AACCCGCTCG AGCAGACCTT CGATCGCCGT TTTGCCACCG GTTCCAAGCG CATCAGCGCC
GGTTTCGGCA GGCCGAGCGA CGACGTGCCG GGTGGCCGCG GTGGCGACAA CCGCAAGGGC
GGCCCGCGCG AACCCGATCC CTTGCAGACC TCGGTCGGCT ACATCGGCTC CGATGCCTAT
TTCAACAAGC CGGGCGGTCC GAACCGCGGC CGTGGCGGTC GCCGCCGCTG A
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| Protein sequence | MNDMPDTPDT TAATPSSDST AAPKRRRTRK SADDTVPALD SSAAQAAELP VETPVEQAPA
AQAPAEKKRR AARASVEPVA AAAEAPAEGV AAPARKPRAP RRVDAPSADA SPVEVVAAPD
AVAPAPVAEA SVQSDEGADA AVRPARRSRG RKTQGDAVAV AAADEASAAP SGDAPTGDRV
EAAVEPGETS QSGAVVQAPE RDTRRRDRRQ KQREERPRAV EAEAAPAIFT LGEMPEGEAG
AADAALALPV DAGQLFAAVL SGDYDVEDAE EEEVSADPGK RVLRPEPEAP KLHKVLAQAG
VGSRRDMEQL IQEGQVSVNG EVAHIGMRIA QGDQIKIAGR PIKVRIAPPP ARVLAYHKPV
GEVVTHHDPE GRPTVFRRLP RLPVGKWLSV GRLDINTEGL LLFTNSGELA NQLMHPRFGV
EREYAVRVLG SLDEAARARL LEGVEIEGQR AMFKSIDDGG GEGINHWYRV VITEGRNREV
RRLFDAVGLT VSRLIRIRYA TVVLPRGLKR GVWVELDDND VRQIRQIANG PRAERGEREE
RGPRADRAER GPRDGQQPGR GAGKGKGGGQ GQGQGPQMSQ GGQNAPGGRG NQQRGNKPVG
KGGQGGQGFE RRGPDGRPGA PRSGGAEWRD ERPARDGNVS REPPREREDG DFGDDPLHIP
NPLEQTFDRR FATGSKRISA GFGRPSDDVP GGRGGDNRKG GPREPDPLQT SVGYIGSDAY
FNKPGGPNRG RGGRRR
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