Gene Lcho_2870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2870 
Symbol 
ID6159745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp3159340 
End bp3160260 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content69% 
IMG OID641665649 
Producttype IV pilus biogenesis/stability protein PilW 
Protein accessionYP_001791900 
Protein GI171059551 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID[TIGR02521] type IV pilus biogenesis/stability protein PilW 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGAAC CTGCTTCATC CGAGCGCCGG CCCGTGACCG GCGCGCACCT GACCCGGATC 
GGTGTCCGGC TCGGCGCTGC GCTGCTGCTG GCGTCGACGC TGCTGGCGTG CACCACGACC 
ACCGAGGTGG TGTCGACCAC GGTGGGCGAC ACGCGCATCC CGGCGCCCTC CCAGCCTGTC 
GCGGTCAACA GCAGCAGCAA TGCGGCGACG CGGCCGGATC TGGTCACGGC GTCCGATGAA 
ACCGATGCGG CCAAGCGCTC GCGCATCCGC CTCGAGCTGG CTTCGGCCTA TTTCGCCCAG 
GGCCAGGCCG GCACGGCGCT CGACGAAGTC AAGCGCGCCC TGGTGGCCGA CCCGAACAGC 
GCCTCGGCCT TCAACCTGCG TGGCCTGATC TACGCCAGCA TGTCCGAGAA CGCGCTGGCC 
GAAGAGAGCT TCCGGCGCGC GCTGTCGCTC AACGGCGGCG ATGCCGACGC GCTGCACAAC 
TACGCCTGGT TCCTGTGCCG GCAGCAGCGC TACCCCGATG CGCGCCGCTA TTTCGAGCAG 
GCACTGGCGA TCCCCCAATA CCGCGAACAG ACCAAGAGCC TGCTGGCACA AGGCGTCTGC 
GAAGCCCGCG CCGGCGACCT GAACGCGGCC GAGCGCCTGC TGCTGCGCAG CTACGAGCTC 
GACGCAGGCA ACCCGGCCAC CGCCTTCAAC CTGGCCGAGG TGCTGCTGCG CAAGGGCGAC 
CTCGATCGGG CGCGCTTCTA CATCCAGCGT GTCAACCAGG CCAACGAACT GGCCACCGCC 
GAGACGCTGT GGCTGGCCGC ACGCATCGAA CACAAGCGCA AGAATCCGAC GGCGGTCGAC 
GAGTTCGGCA GCCAGTTGCG CACCCGCTTC CCCGGTTCAC GGGAAAGTGC GGCTTTTGAA 
CGAGGACAAC TCGATGAGTG A
 
Protein sequence
MREPASSERR PVTGAHLTRI GVRLGAALLL ASTLLACTTT TEVVSTTVGD TRIPAPSQPV 
AVNSSSNAAT RPDLVTASDE TDAAKRSRIR LELASAYFAQ GQAGTALDEV KRALVADPNS 
ASAFNLRGLI YASMSENALA EESFRRALSL NGGDADALHN YAWFLCRQQR YPDARRYFEQ 
ALAIPQYREQ TKSLLAQGVC EARAGDLNAA ERLLLRSYEL DAGNPATAFN LAEVLLRKGD 
LDRARFYIQR VNQANELATA ETLWLAARIE HKRKNPTAVD EFGSQLRTRF PGSRESAAFE 
RGQLDE