| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2862 |
|---|
| Symbol | |
|---|
| ID | 6159963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3150833 |
|---|
| End bp | 3152071 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641665641 |
|---|
| Product | GTP-binding proten HflX |
|---|
| Protein accession | YP_001791892 |
|---|
| Protein GI | 171059543 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2262] GTPases |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03156] GTP-binding protein HflX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACTGCAT CGGATGTCAC CCCCCGCCCA CGTGCCTTGC TCGTGGGCGT GGATCTGGGG
GTCGGTTCTT CATTTGATCC CACGCTGGAT GAGCTGGCGT TGCTGGCCGA GTCGGCTGGC
GACGAAGCCG TCGCGCGCCT GATCGCCCGC CGCAAGGCGC CCGATCCGGC CTTGTTCGTC
GGCTCGGGCA AGGCCGACGA GATCAAGGAG CTGATCGCGC TCCATCAGGC CGATTGCGTC
ATCTTCGACC AGGCGATCGG CCCGGCCCAG CAGCGCAATC TCGAGCGCCA TCTCGGTGTC
GAGGTGCTCG ATCGCACCGG CCTGATCCTC GAGATCTTTG CCGCCCGCGC GCGCAGCCAC
GAGGGCAAGC TGCAGGTCGA GCTGGCCCGG CTGCAATACC TTTCGACACG GCTCGTCCGC
CGCTGGTCGC ACCTGGAGCG CCAGCGCGGT GGTGTCGGCC TGCGCGGTGG CCCGGGTGAA
ACCCAGATCG AACTCGATCG CCGCATGATC GACGTGCGCA TCAAGTCGGT CAAGGAACGC
CTCGAGAAGG TCAAGCGCCA GCGCGGCACG CAACGCAAGT CGCGCGAGCG GCATGGCACG
TTCCGGGTCT CGCTGGTCGG CTACACCAAT GCGGGCAAGA GCACGCTGTT CAATGTGCTG
GTGAAGGCGC AGGCCTACGC GGCCGATCAG CTCTTCGCCA CGCTCGACAC CACCACGCGG
CAGATGTACC TCGAAGATGC CAGGCGCAGC GTGTCGCTAT CCGACACGGT GGGGTTCATT
CGCGATCTGC CGCACAGCCT CGTGGAGGCT TTTCAGGCCA CGCTGCAGGA GTCTGCCGAC
TCCGACCTGC TGCTGCACGT GGTCGATGCG GCCAGTCCGA CCTGGCTTGA ACAGCTGCAT
GAAGTGCAGC GCGTTCTGCG CGAGATCGGT GCCGAGTCGG TGCCGCAGTT CCTGGTCTTC
AACAAGATCG ATCTTCTCGA GGATGACGCG CTCCCGCGTG TGATGTGCGA TCAGTACGAG
ATCGAGCCGG GACGGGTCGT GTCCCGATTC TTCATCAGCG CAGCGGCCAA CGAAGGCCTG
GGCGCATTGC GCCGCGCGAT CGCCCAGGCT TCTCTCGACG CCGACGCCCG TCGCGGCCAG
CCTCTGGCCG ATGTCCGTTT TGATCCCGTG CCCCCTGATG CGGAACCTAT GGCGCCAGAG
GCATCCAATG ATGTCCCGGC GCACCCGCAC GAGGCTTGA
|
|---|
| Protein sequence | MTASDVTPRP RALLVGVDLG VGSSFDPTLD ELALLAESAG DEAVARLIAR RKAPDPALFV
GSGKADEIKE LIALHQADCV IFDQAIGPAQ QRNLERHLGV EVLDRTGLIL EIFAARARSH
EGKLQVELAR LQYLSTRLVR RWSHLERQRG GVGLRGGPGE TQIELDRRMI DVRIKSVKER
LEKVKRQRGT QRKSRERHGT FRVSLVGYTN AGKSTLFNVL VKAQAYAADQ LFATLDTTTR
QMYLEDARRS VSLSDTVGFI RDLPHSLVEA FQATLQESAD SDLLLHVVDA ASPTWLEQLH
EVQRVLREIG AESVPQFLVF NKIDLLEDDA LPRVMCDQYE IEPGRVVSRF FISAAANEGL
GALRRAIAQA SLDADARRGQ PLADVRFDPV PPDAEPMAPE ASNDVPAHPH EA
|
|---|
| |