| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2817 |
|---|
| Symbol | |
|---|
| ID | 6161658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3102722 |
|---|
| End bp | 3104626 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641665595 |
|---|
| Product | ATP-dependent metalloprotease FtsH |
|---|
| Protein accession | YP_001791847 |
|---|
| Protein GI | 171059498 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACAATC AATGGTTCTC CAAAGTTGCA GTGTGGATGG TGATCGCCCT GGTGCTGTTC
ACCGTGTTCA AGCAGTTCGA CCGCACGGCG ACCGCTGGTA ACCAGATCGG CTATTCGGAG
TTTCTCGAGG AAGTGCGCGC CAAGCGCATT CGCGAGGTGG TGCTGCAGGA AAATCCTGGT
GGTGCCGAGA TCGAAGCCCT GACCACCGAT GACAAGCGCA TTCGCACCAC GGCCACCTAC
CTGGATCGTG GCCTCGTGGG CGACCTCATC GCCAACGGAG TCAAGTTCAA GGTCAAGCCG
CGTGAAGAGC CGTCATTGCT GACGAGCCTG CTGATTTCCT GGGGGCCGAT GCTGCTGCTG
ATCGGCGTAT GGGTCTACTT CATGCGCCAG ATGCAAGGCG GTGGCAAGGG CGGCGCTTTC
AGCTTCGGCA AGAGCCGTGC GCGCATGCTC GACGAGAGCA ACAACTCCGT CACCTTCGCC
GACGTTGCAG GTTGCGACGA GGCGAAAGAG GAAGTCAAGG AACTGGTCGA CTTCCTGAAG
GACCCGCAAA AGTTCCAGAA GCTGGGCGGA CGAATTCCGC GTGGCGTCTT GATGGTCGGC
CCGCCGGGTA CCGGTAAAAC GCTTCTGGCC AAGTCCATCG CGGGTGAAGC CAAGGTTCCG
TTCTTTTCGA TCTCCGGCTC CGACTTCGTC GAGATGTTCG TGGGTGTCGG TGCTGCTCGC
GTGCGGGACA TGTTCGAGCA GGCCAAGAAG AACGCGCCGT GCATCATCTT CATCGATGAA
ATCGATGCTG TCGGTCGTCA TCGCGGTGCT GGTCTGGGGG GCGGCAACGA CGAGCGCGAG
CAGACGCTCA ACCAGATGCT GGTCGAGATG GATGGTTTCG AGACCAACCT CGGCGTGATC
GTGATTGCAG CGACCAACCG TCCGGACATC CTGGATCCTG CGCTGCTGCG TCCGGGCCGC
TTTGACCGGC AGGTCTACGT GACCTTGCCC GACGTGCGTG GGCGCGAGCA GATCCTGAAC
GTGCACATGC GCAAGATTCC GATGGGTCAG GACATTCGTG CCGACATCCT TGCGCGTGGC
ACCCCCGGTT TCTCCGGTGC CGATCTTGCC AATCTGGTCA ACGAAGCAGC CCTGTTCGCT
GCCCGCCGCA GCGCGCGGGT GGTCGAGATG GTCGACTTCG AGAAGGCCAA GGACAAGATC
ATGATGGGCC CCGAGCGCAA GTCGATGGTC ATGCCCGAAG AGGAGCGCAA GAACACTGCG
TACCACGAAT CCGGACACGC GCTGGTTGCC CGCCTGATGC CCAAGACCGA TCCGGTTCAC
AAGGTGACGA TCATTCCGCG TGGCCGTGCT CTCGGTCTGA CCATGCAGCT GCCCGAAGGC
GATCGCTACA GTCTTGACAA GGAGCGGATG CTGTCGACGA TTTCGGTGCT GTTCGGTGGG
CGCATTGCCG AGGAGGTGTT CATGAACCAG ATGACCACCG GCGCCAGCAA CGACTTCGAA
AGGGCCACGC AGATCGCGCG TGACATGGTG ACCCGTTACG GCATGACCGA AGAACTCGGT
CCGATGGTCT ACGCTGAAAA CGAGGGCGAA GTGTTCCTGG GCCGCTCCAT CACCAAGCAG
GTCAACGTTT CCGAAGAAAC GATGAAGAAG GTCGACAAGG AGATCCGCAA GATCATCGAT
ACCCAGTATT CGCTGGCTCG TCAGTTGATC GAGGAGAACC AGGACAAGAT GCACACGATG
GCGCGTGCAT TGCTCGACTG GGAGACCATC GACTCTGACC AGATCGAAGA CATCATGCAG
GGTCGTCAAC CGCGTCCGCC GAAGGACTGG GTGCCGCCCG CATCGAAGCC CCCCGGTGGT
CCGTCGAATC CGTCCGTGAG TCCAAATGCT GCGGCGACGG TCTGA
|
|---|
| Protein sequence | MNNQWFSKVA VWMVIALVLF TVFKQFDRTA TAGNQIGYSE FLEEVRAKRI REVVLQENPG
GAEIEALTTD DKRIRTTATY LDRGLVGDLI ANGVKFKVKP REEPSLLTSL LISWGPMLLL
IGVWVYFMRQ MQGGGKGGAF SFGKSRARML DESNNSVTFA DVAGCDEAKE EVKELVDFLK
DPQKFQKLGG RIPRGVLMVG PPGTGKTLLA KSIAGEAKVP FFSISGSDFV EMFVGVGAAR
VRDMFEQAKK NAPCIIFIDE IDAVGRHRGA GLGGGNDERE QTLNQMLVEM DGFETNLGVI
VIAATNRPDI LDPALLRPGR FDRQVYVTLP DVRGREQILN VHMRKIPMGQ DIRADILARG
TPGFSGADLA NLVNEAALFA ARRSARVVEM VDFEKAKDKI MMGPERKSMV MPEEERKNTA
YHESGHALVA RLMPKTDPVH KVTIIPRGRA LGLTMQLPEG DRYSLDKERM LSTISVLFGG
RIAEEVFMNQ MTTGASNDFE RATQIARDMV TRYGMTEELG PMVYAENEGE VFLGRSITKQ
VNVSEETMKK VDKEIRKIID TQYSLARQLI EENQDKMHTM ARALLDWETI DSDQIEDIMQ
GRQPRPPKDW VPPASKPPGG PSNPSVSPNA AATV
|
|---|
| |