Gene Lcho_2782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2782 
Symbol 
ID6162273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3065147 
End bp3065680 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content67% 
IMG OID641665559 
Producthypothetical protein 
Protein accessionYP_001791812 
Protein GI171059463 
COG category[S] Function unknown 
COG ID[COG1430] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000264775 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATCCAAA TCAAGAATGA CATCCTGACC ATCAAGGACA ACCCGACCTG TCGTGGCCAC 
GCGACGGCGG CGGCGCGGAT CCTTCGGCGG GTGGGGGCCG GCATCCTCGC GCTGCTGCTG
AGCGCAGGCG CGGTGACGGC AGGCGCCCAG GAAAGCGCAC AGAAGCTCGA GACGATCCGC
CTCAACGCCG GCATGCACCT GATCACCGCC GAGGTGGCAC AGACCCCCGC GCAGCGCCAG
ATCGGCCTGA TGCACCGCCC GAGCATGCCG GCCAACGACG GCATGCTGTT CGTCTTCGAG
GAGCGTGGCA TGCACTGCTT CTGGATGAAG AACACGCTGC TGCCGCTGGC GATCGCCTTC
ATCGCCGACG ACGGCCGCAT CGTCAACATC GCCGAGATGC AGGCCGGCAG CGAGGCCTCG
CACTGCCCGC GCCAGCCGGT GCGCTACGCA CTGGAGATGA ACCAGGGCTG GTTCGCCAAA
CGCGGTTTCA AGGCCGGCGC CCGGATCGAC GGCGGCCCGT TTCCGGTTCG TTGA
 
Protein sequence
MIQIKNDILT IKDNPTCRGH ATAAARILRR VGAGILALLL SAGAVTAGAQ ESAQKLETIR 
LNAGMHLITA EVAQTPAQRQ IGLMHRPSMP ANDGMLFVFE ERGMHCFWMK NTLLPLAIAF
IADDGRIVNI AEMQAGSEAS HCPRQPVRYA LEMNQGWFAK RGFKAGARID GGPFPVR