| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2769 |
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| Symbol | |
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| ID | 6163402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 3052648 |
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| End bp | 3053901 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641665546 |
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| Product | isocitrate dehydrogenase, NADP-dependent |
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| Protein accession | YP_001791799 |
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| Protein GI | 171059450 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0538] Isocitrate dehydrogenases |
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| TIGRFAM ID | [TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0196883 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCAAC ACATCCAGGT GCCCACGAGT GGCCAGAAGA TCACCGTCAA TGCGGACTTC
TCGCTCAACG TGCCGAGCAA CCCGATCATT CCGTACATCG AAGGCGACGG CACCGGCCTG
GACATCACCC CGGTGATGCT CAAGGTGGTC GACGCCGCGG TGGTCAAGGC CTACGCCGGC
CAGCGCCAGA TCCACTGGAT GGAGATCTAC GCCGGCGAGA AGGCCACCCA GGTCTACGGC
CCCGACGTCT GGCTGCCCGC CGAAACGCTC GAGGTGCTGC GCGAGTACGT GGTCTCGATC
AAGGGCCCGC TGACCACGCC GGTGGGTGGC GGCATCCGCT CGCTCAACGT CGCGCTGCGC
CAGGAACTCG ACCTCTACGT CTGCCTGCGC CCGGTGCAGT ATTTCAAGGG CGTGCCCTCG
CCGGTGAAGG AGCCGCACAA GATCGACATG GTGATCTTCC GCGAGAACTC CGAAGACATC
TACGCCGGCA TCGAGTACGA GGCCAAGAGC GAGAAGGCGC AGAAGCTCAT CAAGTTCCTG
CAGGAGGAAA TGGGCGTCAA GAAGATCCGC TTCCCCGACA CCTCGGGCAT CGGCATCAAG
CCGGTCTCGA TCGAGGGCAC CGAGCGCCTG ATGCGCAAGG CGATCCAGTA CGCGATCGAC
AACGACCGCT CCAGCGTGAC CATCGTGCAC AAGGGCAACA TCATGAAGTA CACCGAAGGT
GGCTTCCGTG ACTGGGCCTA CAAGCTGGCG CAGACCGAGT TCGGCGCCGA GCTGATCGAC
GGCGGCCCGT GGTGCAAGTT CAAGAGCCCG AAGAACGGCC GCGACATCAC CATCAAGGAC
AGCATCGCCG ACGCCTTCCT GCAGCAGATC CTGCTGCGCC CGGCCGAGTA CTCGGTGATC
GCCACGCTCA ACCTCAACGG CGACTACATC TCCGACGCCC TGGCCGCGCA GGTCGGCGGC
ATCGGCATCG CCCCGGGCGC CAACCTGAGC GACTCGGTGG CCTGCTTCGA GGCCACCCAC
GGCACGGCGC CCAAGTACGC CGGCAAGGAC TACGTCAACC CCGGCTCGGA GATCCTCTCG
GCCGAGATGA TGCTGCGCCA CATGGGCTGG CTTGAGGCGG CCGACCTGAT CCTCGTGTCT
ATGGAGCGCG CCATCGCCAG CAAGAAGGTC ACCTACGACT TCGCCCGCCT GATGGAGGGC
GCGACCCAGG TGTCGTGTTC GGGCTTCGGT CAGGTCATGA TCGACTGCAT GTGA
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| Protein sequence | MYQHIQVPTS GQKITVNADF SLNVPSNPII PYIEGDGTGL DITPVMLKVV DAAVVKAYAG
QRQIHWMEIY AGEKATQVYG PDVWLPAETL EVLREYVVSI KGPLTTPVGG GIRSLNVALR
QELDLYVCLR PVQYFKGVPS PVKEPHKIDM VIFRENSEDI YAGIEYEAKS EKAQKLIKFL
QEEMGVKKIR FPDTSGIGIK PVSIEGTERL MRKAIQYAID NDRSSVTIVH KGNIMKYTEG
GFRDWAYKLA QTEFGAELID GGPWCKFKSP KNGRDITIKD SIADAFLQQI LLRPAEYSVI
ATLNLNGDYI SDALAAQVGG IGIAPGANLS DSVACFEATH GTAPKYAGKD YVNPGSEILS
AEMMLRHMGW LEAADLILVS MERAIASKKV TYDFARLMEG ATQVSCSGFG QVMIDCM
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