| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2763 |
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| Symbol | |
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| ID | 6163621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 3043118 |
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| End bp | 3045373 |
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| Gene Length | 2256 bp |
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| Protein Length | 751 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665540 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001791793 |
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| Protein GI | 171059444 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.256566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACCG CGCTGGTCGC CCTGCTGATC GGGCTGGTCG ACCCGCTGCT GCACCGCATC
GAGTTCATCA GCTACGACAT GTTGATGGAG CTGCCGGGCG TGCTGCTGCG AGGTGCCGGC
GACGCGCGGC ACCCACCGTC CGGGCGCCTG GACCCCGCGC GGCTGATACA GCCCCTGAAC
GAGTCGATCT GCCACGCGGT CAACCTGCTG CCGCTGCTGC TGCTGGCCCT GCTGCAGCAA
TGCCGGCCGC GGCGCTTTCA CGTCCACGGC CTCTGGCTGC TGCCGTTGCC GATGCTGGTG
ACCGGGCTGG CGCTGGCGCT CTGGCAGCTC TGGATACCGA CTGTCGGCCT GAGCATCGGG
CTGGTCACGG GCTGGCTGCT GACACGCAAC CAGGAGCTGC GCAGCGCGCG CATGGCGCTG
CAGCACGAGC GCGGTCAGGC CGACGCCACG CTGCAGGCGA TCACCGACAG CGTCATCACG
GTCGACACCG GCGCTCGGGT GCAGTACCTC AACCCGAGCG CCGAACGACT GGCCGGTCAC
AGTCTGGCCG AGGCCCGCGG CCATGCCGTC GGCACGCTGT TCCAGTGGGA CGAGCCGGAC
GCGCAGACAC TCGAGCAGGC GCTGGCCGAA TGCCTGCAGG AACGCCGCGT CGTGCAGGTC
GGCTTGGCGC TGCGACTGAA GGCGCCGCAG GGCGAGCGCC AGGTGCAGAT CATCGCCAGC
CCGGTGTTCG AGCGCCAGAT CGAATCCGGC CTGTCCGGCG ATCGGCTCGA CCGTCCGCTG
CGCAGGGCGC CGGCCGATCA CGACCGCGAC CGCGTCACCG GGGCCGTGCT GGCGCTGAGC
GATGTCACCG AGGCCCTGCG TGCGGCCGAC AAGCTGCAGC ACGAGGCCAC CCACGACGCC
CTCACCGGCC TGCCCAACCG GGCCTTGCTG AGCGACCGCC TGCAGCACGC CGTGCTCGGC
GCGCAGGCCG GCCAGCGCAG CGTGGCGGTG CTGTTCATCG ACCTCGATCG TTTCAAGCGC
ATCAACGACA GCCTCGGCCA CCGCCACGGC GACGCCGTGC TGAAGGAAGT GGCCTCGCGC
CTGCAGCAGT GCTGCCGCGC CCACGACACG CTGGCGCGCT GGGGTGGCGA CGAATTCGTC
GTGCTGCTCG AGGACGTGCC CAGCCGTGAC GCCGTCGCTG CCCGCGCGGC GCAGATGATC
GACAGCGTGA CCCTCGAGTT CGCGATCGAC CAGGTCGAGG TGGCCTGCGG CTGCAGCATC
GGCATCGCGA TGGCGCCGCA GGACGGCGTG GCGGTCGATG CCCTGCTGGC GATGGCCGAC
ACGGCGATGT ACCGCGGCAA GTCGCGTGGC GGCAAGCGGT TCGAGTTCTA TGCCAGCGAG
ATGCCGTCCT GGACGCGCGA GTGGCTGGCG CTCGAGACCC GCCTGCGCCA CGGCCTGGAG
ACGCAGAGCT TCGTGCTGCA CTACCAGCCG CAGGTGAACC TCAAGACCGG CCAGCTGGTC
GGCCTGGAAG CCCTGCTGCG CTGGCGTCAG CCCGACGGCG AGCTGTGGCT GCCAGGGCGT
TTCCTGCCGG TCACCGAAGA GACCGGCCTG ATCCTGCCGA TCGGCGAATG GGTGATCCGC
GAAGCCACCC AGCAGCTCGC CCGCTGGCGC GACCAGGGCC TGCCGCTGGT GCCGGTGTCG
GTCAACGTGT CGACCCGCCA GTGCCTGGAT CGCCGGCTGG TGCAGGTGGT GGCCGAAGCG
CTGCTGTGCA GCGGCATCGA CGCCGGGCTG CTCAAGCTGG AAGTCACCGA ATCGACCGCG
ATGGCCGATC TCGGCCACCT GCGCGGCCTG CTGGTCGAGC TGCGCGCGCT GGGCGTGCAG
GTGGCGATGG ACGACTTCGG CACTGGTTTC TCGTCGCTGT CGCACCTCAA GCATTTCCAG
ATCGACCAGA TCAAGATCGA CCCCAGCTTC GTGCGCGACA TCAGCCGCGA TGCCAACGGC
GCGGCGATCG TGCGCGCCAC CATCGCGCTG GCCCACGGCC TGGGCCTGCC GGTGGTGGCC
GAGGGGGTCG AGTCCGAGGA GCAGATGGCT TTTCTCTCCG CCCACCACTG CGACATCGCG
CAGGGTTTCC TGTACGCCCG CGCCCAGGAC AGCGACAGCG TCGCCTCGAT GCTGAGCCTG
AGCCTGGCCA CCGGCACGCC GCTGCAGAGC TCGACCTGGC AGGCCATGCC CGAGCAGCCG
GCCAGGATCG AGACCGCGAC CGCGGCCCCG ACCTGA
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| Protein sequence | MATALVALLI GLVDPLLHRI EFISYDMLME LPGVLLRGAG DARHPPSGRL DPARLIQPLN
ESICHAVNLL PLLLLALLQQ CRPRRFHVHG LWLLPLPMLV TGLALALWQL WIPTVGLSIG
LVTGWLLTRN QELRSARMAL QHERGQADAT LQAITDSVIT VDTGARVQYL NPSAERLAGH
SLAEARGHAV GTLFQWDEPD AQTLEQALAE CLQERRVVQV GLALRLKAPQ GERQVQIIAS
PVFERQIESG LSGDRLDRPL RRAPADHDRD RVTGAVLALS DVTEALRAAD KLQHEATHDA
LTGLPNRALL SDRLQHAVLG AQAGQRSVAV LFIDLDRFKR INDSLGHRHG DAVLKEVASR
LQQCCRAHDT LARWGGDEFV VLLEDVPSRD AVAARAAQMI DSVTLEFAID QVEVACGCSI
GIAMAPQDGV AVDALLAMAD TAMYRGKSRG GKRFEFYASE MPSWTREWLA LETRLRHGLE
TQSFVLHYQP QVNLKTGQLV GLEALLRWRQ PDGELWLPGR FLPVTEETGL ILPIGEWVIR
EATQQLARWR DQGLPLVPVS VNVSTRQCLD RRLVQVVAEA LLCSGIDAGL LKLEVTESTA
MADLGHLRGL LVELRALGVQ VAMDDFGTGF SSLSHLKHFQ IDQIKIDPSF VRDISRDANG
AAIVRATIAL AHGLGLPVVA EGVESEEQMA FLSAHHCDIA QGFLYARAQD SDSVASMLSL
SLATGTPLQS STWQAMPEQP ARIETATAAP T
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