Gene Lcho_2744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2744 
Symbol 
ID6163041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp3021920 
End bp3023260 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content71% 
IMG OID641665521 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001791774 
Protein GI171059425 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000449051 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTTTCCTG ATTCACGTTC CCTGCCCCTG GGGGCACGGC GCCGATCGCT GGCGCAGCAT 
GCACGCCGTC GCCGTCGAGG TGCCGCATCG GCGCCTGCGG CGGCAGCCGG TGACACGGTC
GCCGACCTGG CGCTGCTGCG CCAGAGTGTC GAGGGCCTGG CCCACCCGCT GCTGTCCGGC
GGCGCCCGCA TGGTGTGCTC GGACGTCGAT GCCATCAGCG TCTGGGTCCA GCGCCTGGTG
CTGCAGCTGC TCGAGCGCAA CGATCAGATC GACGCGGTGT TCGCGCTCAG CCCCGATGGC
CTGGTGATGT TCGATGCGCT GGGCCGCGTC AGCCGCGTCA ATGCGGCGTT CACGCGCATG
ACCGGCCTGA CGGCCGAGAT GCTGCACGGT GTCGAAGAGG CGGTGTTCCT GTTTCGCCTG
AACACGCGCT GCACGGCGCC CCATCTGCTC GTCAGCCTCG AGAGCCTGCG GGTGCCGCTC
GGCGCCGATC CGGCCGACCG CTCCGGGCGC GACGTCGTCC GTCTGTTGCG GCCGGCGCCG
CGCACCCTCA AGCTCGGCCT CTACGGGGGC ATGCACGGCC AGGCCACGCA GGTGCTGCAC
CTGCGCGACA TCACCCGCGA GAAGCAGATC GACCAGATGA AAAGCGAGTT TCTCGCCACC
GCCGCGCACG AGTTGCGCAC GCCGATGGCG AGCGTGTTCG GTTTCACCGA ACTGCTGGTC
ACGCGCGAGA TGGCGCCGCA GCGGCGCCAG GACGTGCTCG AACGTGTCTA CCGCCAGAGC
GGTGCGATGG TCAGCATCCT CAACGAGCTG CTCGACCTGG CGCGCATCGA ATCGGGCCGC
GGCATGGATT TCGAGTTCGA GGACACCGAC CTGGCCGCGC TGGTGCGCGG CGTGGTGCAC
GACTTCGCCG TGCCCGCCGG CCGCGAGGCC ATCGACGTGG GCGTGGCCGG CGAGCTGCCG
CTGCGGGCGA GGGTCGACTA CCGCAAGCTG CAGCAGTCGA TGCGCAACCT GCTGTCCAAC
GCCTACAAGT ATTCGCCCGA CGGCGGGCCG GTGCGGGTTG CCGTGCGGCT CGATACGGGC
ACGTCGGGCG GGCCGTGGGT GGCCATCGCG GTGCACGACC GCGGCATCGG CCTGAGCGCC
GAACAGCTGG CGCGCGTGGG CGAGCGCTTC TTCCGGGTCG ACAAGTCCGG CGCGCTGCCG
GGCACCGGCC TGGGCGTGAG CATCGTGCAG CAGATCGCCG AACTGCACGG CGGCTCGCTC
GAGATCGAGA GCCGGCTCGG CGAGGGCAGC ACCTTCACGC TGCGCCTGCC GGCCGAGCCC
CGCTTCAGTC CGGCAGCGTG A
 
Protein sequence
MFPDSRSLPL GARRRSLAQH ARRRRRGAAS APAAAAGDTV ADLALLRQSV EGLAHPLLSG 
GARMVCSDVD AISVWVQRLV LQLLERNDQI DAVFALSPDG LVMFDALGRV SRVNAAFTRM
TGLTAEMLHG VEEAVFLFRL NTRCTAPHLL VSLESLRVPL GADPADRSGR DVVRLLRPAP
RTLKLGLYGG MHGQATQVLH LRDITREKQI DQMKSEFLAT AAHELRTPMA SVFGFTELLV
TREMAPQRRQ DVLERVYRQS GAMVSILNEL LDLARIESGR GMDFEFEDTD LAALVRGVVH
DFAVPAGREA IDVGVAGELP LRARVDYRKL QQSMRNLLSN AYKYSPDGGP VRVAVRLDTG
TSGGPWVAIA VHDRGIGLSA EQLARVGERF FRVDKSGALP GTGLGVSIVQ QIAELHGGSL
EIESRLGEGS TFTLRLPAEP RFSPAA