| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2744 |
|---|
| Symbol | |
|---|
| ID | 6163041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 3021920 |
|---|
| End bp | 3023260 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665521 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001791774 |
|---|
| Protein GI | 171059425 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000449051 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTTTCCTG ATTCACGTTC CCTGCCCCTG GGGGCACGGC GCCGATCGCT GGCGCAGCAT
GCACGCCGTC GCCGTCGAGG TGCCGCATCG GCGCCTGCGG CGGCAGCCGG TGACACGGTC
GCCGACCTGG CGCTGCTGCG CCAGAGTGTC GAGGGCCTGG CCCACCCGCT GCTGTCCGGC
GGCGCCCGCA TGGTGTGCTC GGACGTCGAT GCCATCAGCG TCTGGGTCCA GCGCCTGGTG
CTGCAGCTGC TCGAGCGCAA CGATCAGATC GACGCGGTGT TCGCGCTCAG CCCCGATGGC
CTGGTGATGT TCGATGCGCT GGGCCGCGTC AGCCGCGTCA ATGCGGCGTT CACGCGCATG
ACCGGCCTGA CGGCCGAGAT GCTGCACGGT GTCGAAGAGG CGGTGTTCCT GTTTCGCCTG
AACACGCGCT GCACGGCGCC CCATCTGCTC GTCAGCCTCG AGAGCCTGCG GGTGCCGCTC
GGCGCCGATC CGGCCGACCG CTCCGGGCGC GACGTCGTCC GTCTGTTGCG GCCGGCGCCG
CGCACCCTCA AGCTCGGCCT CTACGGGGGC ATGCACGGCC AGGCCACGCA GGTGCTGCAC
CTGCGCGACA TCACCCGCGA GAAGCAGATC GACCAGATGA AAAGCGAGTT TCTCGCCACC
GCCGCGCACG AGTTGCGCAC GCCGATGGCG AGCGTGTTCG GTTTCACCGA ACTGCTGGTC
ACGCGCGAGA TGGCGCCGCA GCGGCGCCAG GACGTGCTCG AACGTGTCTA CCGCCAGAGC
GGTGCGATGG TCAGCATCCT CAACGAGCTG CTCGACCTGG CGCGCATCGA ATCGGGCCGC
GGCATGGATT TCGAGTTCGA GGACACCGAC CTGGCCGCGC TGGTGCGCGG CGTGGTGCAC
GACTTCGCCG TGCCCGCCGG CCGCGAGGCC ATCGACGTGG GCGTGGCCGG CGAGCTGCCG
CTGCGGGCGA GGGTCGACTA CCGCAAGCTG CAGCAGTCGA TGCGCAACCT GCTGTCCAAC
GCCTACAAGT ATTCGCCCGA CGGCGGGCCG GTGCGGGTTG CCGTGCGGCT CGATACGGGC
ACGTCGGGCG GGCCGTGGGT GGCCATCGCG GTGCACGACC GCGGCATCGG CCTGAGCGCC
GAACAGCTGG CGCGCGTGGG CGAGCGCTTC TTCCGGGTCG ACAAGTCCGG CGCGCTGCCG
GGCACCGGCC TGGGCGTGAG CATCGTGCAG CAGATCGCCG AACTGCACGG CGGCTCGCTC
GAGATCGAGA GCCGGCTCGG CGAGGGCAGC ACCTTCACGC TGCGCCTGCC GGCCGAGCCC
CGCTTCAGTC CGGCAGCGTG A
|
|---|
| Protein sequence | MFPDSRSLPL GARRRSLAQH ARRRRRGAAS APAAAAGDTV ADLALLRQSV EGLAHPLLSG
GARMVCSDVD AISVWVQRLV LQLLERNDQI DAVFALSPDG LVMFDALGRV SRVNAAFTRM
TGLTAEMLHG VEEAVFLFRL NTRCTAPHLL VSLESLRVPL GADPADRSGR DVVRLLRPAP
RTLKLGLYGG MHGQATQVLH LRDITREKQI DQMKSEFLAT AAHELRTPMA SVFGFTELLV
TREMAPQRRQ DVLERVYRQS GAMVSILNEL LDLARIESGR GMDFEFEDTD LAALVRGVVH
DFAVPAGREA IDVGVAGELP LRARVDYRKL QQSMRNLLSN AYKYSPDGGP VRVAVRLDTG
TSGGPWVAIA VHDRGIGLSA EQLARVGERF FRVDKSGALP GTGLGVSIVQ QIAELHGGSL
EIESRLGEGS TFTLRLPAEP RFSPAA
|
|---|
| |