Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2744 |
Symbol | |
ID | 6163041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3021920 |
End bp | 3023260 |
Gene Length | 1341 bp |
Protein Length | 446 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665521 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_001791774 |
Protein GI | 171059425 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000449051 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTTCCTG ATTCACGTTC CCTGCCCCTG GGGGCACGGC GCCGATCGCT GGCGCAGCAT GCACGCCGTC GCCGTCGAGG TGCCGCATCG GCGCCTGCGG CGGCAGCCGG TGACACGGTC GCCGACCTGG CGCTGCTGCG CCAGAGTGTC GAGGGCCTGG CCCACCCGCT GCTGTCCGGC GGCGCCCGCA TGGTGTGCTC GGACGTCGAT GCCATCAGCG TCTGGGTCCA GCGCCTGGTG CTGCAGCTGC TCGAGCGCAA CGATCAGATC GACGCGGTGT TCGCGCTCAG CCCCGATGGC CTGGTGATGT TCGATGCGCT GGGCCGCGTC AGCCGCGTCA ATGCGGCGTT CACGCGCATG ACCGGCCTGA CGGCCGAGAT GCTGCACGGT GTCGAAGAGG CGGTGTTCCT GTTTCGCCTG AACACGCGCT GCACGGCGCC CCATCTGCTC GTCAGCCTCG AGAGCCTGCG GGTGCCGCTC GGCGCCGATC CGGCCGACCG CTCCGGGCGC GACGTCGTCC GTCTGTTGCG GCCGGCGCCG CGCACCCTCA AGCTCGGCCT CTACGGGGGC ATGCACGGCC AGGCCACGCA GGTGCTGCAC CTGCGCGACA TCACCCGCGA GAAGCAGATC GACCAGATGA AAAGCGAGTT TCTCGCCACC GCCGCGCACG AGTTGCGCAC GCCGATGGCG AGCGTGTTCG GTTTCACCGA ACTGCTGGTC ACGCGCGAGA TGGCGCCGCA GCGGCGCCAG GACGTGCTCG AACGTGTCTA CCGCCAGAGC GGTGCGATGG TCAGCATCCT CAACGAGCTG CTCGACCTGG CGCGCATCGA ATCGGGCCGC GGCATGGATT TCGAGTTCGA GGACACCGAC CTGGCCGCGC TGGTGCGCGG CGTGGTGCAC GACTTCGCCG TGCCCGCCGG CCGCGAGGCC ATCGACGTGG GCGTGGCCGG CGAGCTGCCG CTGCGGGCGA GGGTCGACTA CCGCAAGCTG CAGCAGTCGA TGCGCAACCT GCTGTCCAAC GCCTACAAGT ATTCGCCCGA CGGCGGGCCG GTGCGGGTTG CCGTGCGGCT CGATACGGGC ACGTCGGGCG GGCCGTGGGT GGCCATCGCG GTGCACGACC GCGGCATCGG CCTGAGCGCC GAACAGCTGG CGCGCGTGGG CGAGCGCTTC TTCCGGGTCG ACAAGTCCGG CGCGCTGCCG GGCACCGGCC TGGGCGTGAG CATCGTGCAG CAGATCGCCG AACTGCACGG CGGCTCGCTC GAGATCGAGA GCCGGCTCGG CGAGGGCAGC ACCTTCACGC TGCGCCTGCC GGCCGAGCCC CGCTTCAGTC CGGCAGCGTG A
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Protein sequence | MFPDSRSLPL GARRRSLAQH ARRRRRGAAS APAAAAGDTV ADLALLRQSV EGLAHPLLSG GARMVCSDVD AISVWVQRLV LQLLERNDQI DAVFALSPDG LVMFDALGRV SRVNAAFTRM TGLTAEMLHG VEEAVFLFRL NTRCTAPHLL VSLESLRVPL GADPADRSGR DVVRLLRPAP RTLKLGLYGG MHGQATQVLH LRDITREKQI DQMKSEFLAT AAHELRTPMA SVFGFTELLV TREMAPQRRQ DVLERVYRQS GAMVSILNEL LDLARIESGR GMDFEFEDTD LAALVRGVVH DFAVPAGREA IDVGVAGELP LRARVDYRKL QQSMRNLLSN AYKYSPDGGP VRVAVRLDTG TSGGPWVAIA VHDRGIGLSA EQLARVGERF FRVDKSGALP GTGLGVSIVQ QIAELHGGSL EIESRLGEGS TFTLRLPAEP RFSPAA
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