Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2725 |
Symbol | |
ID | 6160616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 3006548 |
End bp | 3008470 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641665502 |
Product | flagellar hook-associated protein FlgK |
Protein accession | YP_001791755 |
Protein GI | 171059406 |
COG category | [N] Cell motility |
COG ID | [COG1256] Flagellar hook-associated protein |
TIGRFAM ID | [TIGR02492] flagellar hook-associated protein FlgK |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00000557458 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGCACGT CCACGCTCCT GAACCTGGGC ACGCGGGCGA TGTTCGCCTC GCAGGCGCAG TTGCAGACCA CCGGCCACAA CATCGCCAAC GCCAACGTGG CGGGCTATTC GCGCCAGGAC ACCGTGCTGA CCACGGTCGG CGGCCAGTAC AGCGGCGCCG GCTACTACGG CCGCGGCGTG GCGGTGCAGA CCGTCACGCG CGCGGTCAGC GCCTTCCAGA CCGACCAGGT GGCGCAGACC CGCGCCCAGG CCGCTGCCGA TTCGACCCGC TCGGACATGC TGTCGCGCCT GCAGGATTCC TTCGGCACCG GCGAGGCCGG GCTGGGTTTT GCCGCCACCA AGCTGTTCAA CGCCTTCAGC GACGTGGCCT CGTCACCGGC CGACCCGTCG GCGCGCCAGG TGGTGCTGGC GCGCAGCGAG GAGCTGGCGT CGCGCTTCCG GGCCTCGAGC GACCAGATCG AGGCGCTGCA GCTGTCGGTG ACCGAGGACG TCGGCAACAC GGTCAACACC ATCAACGGCC TGGCGCAGAG CGTGGCCGAG CTCAACCAAC AGATCGCCAG CACCCGCGGC AGCGGCCAGG AACCCAACGA CCTGCTCGAC CAGCGCGACC AGCTCGTCAA TGAGCTGAGC CAGCACGTGC AGGTGACGCG GCTCGAGCAG GACGACGGCT CGCTCAACCT GTTCATCGGC GGCGGCCAGA GCCTGGTGCT GGGCAACGCG GCCTACGAGA TGGTGGCGCG CGCCGACCGG TTCGATCCGG CCCGGGTCGA GGTGGCGGTC AAGGTGGCCG GCGTCGAGCG GCCGTTCGAC CAGCAGTCGC TCGGCGGCGG CACGCTGGCC GGCCTGATCG GCTTCCAGAA CAACGACCTG AGCGCCGCCC GCGACCAGCT CGGCCAGCTC GCCAGCACGC TGGCCAGCGA GGTCAACCGG CAGCAGTCGC TCGGCCTGAG CCTGGGCGGC ACGGCCGGCG ACCCGCTGTT CCGCCACGTC GCGGCCAACG CGGTGCCGGC CGCCGGCAAT GCGAGCGATG CCGCCGGCAA CCCGGCGGGC AACGTCGCCC TGACCATCAC CGACAGCCGG GCGCTGCAGG CCAGCGAGTA CGAGCTCAGC GTCAACGCCG ACGGCAGCTT CGACGTGCTG CGGCGCAGCG ACGGCCAGCG CAGCGCCGGC CTCGTCAACG GCGCCGAGGT CGACGGCTTC CGGATCGACT TCGGCAGCTC GGCGCCGCTG GCCGGTGACC GCTTCCTGCT GCAGCCGGTG GGCGGTGCCG CGCAGTCGAT CGAGCTGGCC CTGACCGACC CGAAAGGCAT CGCCGCCGCC AGCCCGATCA GCGTGACCGC GGCGCCGTCC AACCAGGGCA CCGGCCGGCT CAACTCGGTG GTGATCGAGA CCGCCGCCGC CACGCCCTAC GGCAGCATGA CGCTGGCGTT CGGCGCCACC AGCGCCGGTG GCGGGCGCGA CTACCAGCTG CTCGACAGCG GTGGCAGCCT GCTCTCGAGC GGCACCTGGA GCGCGGGCAC GCCGATCCGC TACGACGGCG TCGCCATCAA GATCGACGGC GTGCCGGCCG AGGCCGACAC CTTCGCGGTC GGGCCGACCA CCTTCGCCGC CTCGAGCAAC GGCAACGCGC TGGCGCTGCA GGGCCTGGCC GACACCGCGA TGACGCTCGG CCAGACCTTC ACCAACAGCT ACGCGCAGAC CCTGTCGGAC ATCGGCGTGC GGGTGCAGAG CGCCCAATCG GCGGCGACCG TCTCGGCCGG CGTGGCCGAT CGCGCCAAGG AAGAGCTCGG CGCGCAGACC GGCGTCAATC TCGATGAAGA GGCCGCCCGG CTGCTGCAGT ACCAGCAGGC CTACCAGGCG GCCGCCAAGA TCCTGCAGAC GGCGCAGAAG GTGTTCGACA CCGTGCTGTC GCTGGGCGGC TGA
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Protein sequence | MSTSTLLNLG TRAMFASQAQ LQTTGHNIAN ANVAGYSRQD TVLTTVGGQY SGAGYYGRGV AVQTVTRAVS AFQTDQVAQT RAQAAADSTR SDMLSRLQDS FGTGEAGLGF AATKLFNAFS DVASSPADPS ARQVVLARSE ELASRFRASS DQIEALQLSV TEDVGNTVNT INGLAQSVAE LNQQIASTRG SGQEPNDLLD QRDQLVNELS QHVQVTRLEQ DDGSLNLFIG GGQSLVLGNA AYEMVARADR FDPARVEVAV KVAGVERPFD QQSLGGGTLA GLIGFQNNDL SAARDQLGQL ASTLASEVNR QQSLGLSLGG TAGDPLFRHV AANAVPAAGN ASDAAGNPAG NVALTITDSR ALQASEYELS VNADGSFDVL RRSDGQRSAG LVNGAEVDGF RIDFGSSAPL AGDRFLLQPV GGAAQSIELA LTDPKGIAAA SPISVTAAPS NQGTGRLNSV VIETAAATPY GSMTLAFGAT SAGGGRDYQL LDSGGSLLSS GTWSAGTPIR YDGVAIKIDG VPAEADTFAV GPTTFAASSN GNALALQGLA DTAMTLGQTF TNSYAQTLSD IGVRVQSAQS AATVSAGVAD RAKEELGAQT GVNLDEEAAR LLQYQQAYQA AAKILQTAQK VFDTVLSLGG
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