| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2718 |
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| Symbol | |
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| ID | 6160895 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2993732 |
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| End bp | 2997499 |
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| Gene Length | 3768 bp |
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| Protein Length | 1255 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665495 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001791748 |
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| Protein GI | 171059399 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0403107 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCGA ACGTGAAACC GGTCGAGACC CTCACGCCCG ACCTGTTGTG GCGACTGGCG
CGGGCGGTGT CGTCGACCTC GCGGTTGCTG GACGCGATGA CGGTGGTGGC GCCGAGCGTC
GCCCGCGCAC TCGGCGCGCA GGGCGTCGGC CTGGTCCAGG TGATGCAGTG GCGGCCGGCT
TCGAGCCTGG TGCAGCCCTG GGGCCCCGAA AGCAGCACCG ACGACGAGTG GATCGACCTG
GCGCAGCTGG TGCTGGTCGA AGCCGAGCGC TGCCCGCTGG GCCGGGCGCT GAGCCGCGGC
CAGGTCGAAT ACGGCGCGGT CGGCGTCAGC CCGCAGGCCT GGAACTGGCG GGCGCCGGGT
GTGCGCCAGG TGCTGGTGCT GCCGGTGCTC ACGCTCGAGA CCCCCGATCA CGGGCCCGGC
CCGGTCGCCG TCGCCGGGCT GGCCGCGAGC GAGCCGCTGC GGCCGACGCT GGCGGCGCTC
GAGTTTCACG ATCCCGACCG CTTCGACCCC GAGGTGCTGC CGCTGCTGGG CATGCTCGCC
CTGCAGCTGG CGGCGGTGGC ACGCCGCGAG GCCGACCTGC AGCTGGCCCG CCAGCGCGAC
GAGCAGCTCG CCCAGGTGGC GATGCTGGCC TCGCGCACCG GTCGCTCGAC CGTCATCACC
GACCAGAACG GCCGGATCGA ATGGGTCCAC CCGGCCTTTG CCGAGATCAC CGGCCACCTG
CCGCTGGAGG TGCAGGGCCG CCCGCTCTGG GAAGCGCTGG CGCGTGACCT CACGCGCAGC
GACGCCGCCG CCCAGTTGCG CACCCTGTTC GCCGGCAGCG GTGCCTTCCG GCACGAGTTC
GTGGCGCGCC GCGGCCAGGC CTGCGCCGAG CCCGGCCAGC CATACTGGCT GGAGGTCGAC
GCCGCGCAGG TGATCGACGA GACCACCGGC CGGCTGCAGT TCGTCTGCCT GTGCTCCGAC
ATCTCGAGCC GCAAGGCGCA CGAATCCGGC AACGACGAGC AGCGCGAGCT GCTGGCCGCG
CTGACCGAGA ACCTGCCGAT CAGCCTGCTG GTGCTGGACG CCCAGCGGAT GCAGGTGCTG
TCGCTGAACC GCCACGCCCA GATCGAGTTC GGCGTCTCGC CGACGCCGGG CAACAGCGGC
CTTGACGACA TGCTCGGCGC CGGCCTGCAC GAGCGCATCC GCGCCGAGCT CGACGAGGTG
CTGCAGCGTC CGGGCGCGGT CGAGCACGAG TTCGTCTGGC CGACGGTCGA GGGTCGGCGC
GTCATCAGCG CCCGCCACGT GGCGGTGCAG GATCGCCACG GCCCGCCCCG GGTGGTGATC
ACGCAGCTGC GCGACGTCAC CCGCCAGCGC CGCGACGAGC TGCGCCTGCG CGAGTCCGAA
ACCCGCTACC GCGAGCTGGT CGAGACCATC GACGAGGGCG TTTTCATCAG CAACCCGGCG
CGCGACCAGT GGTATTACAT CGGCCCGCGC ATGTATCAGA TGCTGGGCCT GAAGGTGGCC
GACCGGCGCG AGCACCCCGA CCTGCTGCAG TCGCTGGTGC TGCCCGACGA CGCCCGGCTG
CTGGCGCAGC AGCGCGAACA CGAAGAAGCC CTCGAGGCCA CCGACGTGAC GCTGCGCATC
CGCCACCCCG GCCGCGGCCT GCGCTGGTTG CGCCAGCGCA CCCGCACGCG GGTGCTGCCG
GGCGGCGAGA CGCGCGTCTA CGGCCTGCTC GACGATGTCA CCGACGAGCG CGAGCGGGCG
CTGCAGCTGC AGGCCGCCCG CGACGTGGCC GAGGCCGCCA GCCAGGCCAA GAGCCAGTTC
ATGGCCAGCA TGAGCCACGA GATCCGCACC CCGATGAACG GCATCCTCGG CATGACCGAG
CTGCTGCTGG GCACCCGGCT CGACGACCGC CAGCGCCGCT TCGCGCAGGC GGTCTACCGC
TCGGGCGAGA ACCTGCTGGA GATCATCAAC GACGTGCTCG ACTTCTCGAA GATCGAGGCC
GGCCGGCTCG AACTGGCGCC GACCGACTTC AACCTGCGCA CGCTGATCGA GGACACGCTC
GACCTGCTGG CCCCGCGCGC GCACGAGAAA GGCCTGGAGC TGAGCTTTCG CGAGACCGGC
GATGTGCCGG CCAATGTGCT GGCCGACCCG CTGCGGCTGC GCCAGGTGCT CACGAATCTG
GTGGCCAACG CGGTCAAGTT CACCGAACAC GGCGAGGTCA CGGTTGACCT GCGGTTCCTG
CCGCGGCCGC GGGCCGGGGC GCCGGCGATG CTGGAGTTCC GCGTGCGTGA CACCGGCATC
GGCATGGCCG CCGAGCTGCT GCCGCGGCTG TTCACGGCCT TCACGCAAGC CCACGGCGGC
ATGGCGCGGC GCTACGGCGG CACCGGGCTG GGGCTGGCGA TCTCGCGCCA GCTGGTCGAG
CTGATGGGCG GCCAGATCGA TGTGGTCAGC CAGCCCGGCG TCGGCTCGGA GTTCCGTTTC
ACGATGACCT TCGAGCCCGG CAGCGGCCGC GACAGCGAGG CCGGCGAGCT CACCGCGCTG
CCGCAGGCGC GGGTGCTGGT GGTCGAGGAC CACGCCACCA ACCGCACCGT GCTCGACCAC
CTGCTGAGCG CCTGGGGCCT GAGCGTGACG CTGGCCGTCG ACGGCCAGGC GGCGCTCGAG
CTGCTGCGCA ACCGGCCGGC CGATCAGCCC GATTTCGACA TCGCGCTGGT CGACTGGCGC
ATGCCGCGGC TCGACGGCAT CGGTTTCGCC AAGGCCCTGC GCGCAGAGGG TCTGGCGCCC
GGCACCCAGC TGGTGATGCT GTCGTCGGCC AGCGCGCCCG ACGACGCCCG GCTGGCGCAG
GACGCCGGTT TCGTGCGCTT CATCCACAAG CCGGTGCGCA AGGCCGAGCT GCGCCAGGCG
ATCCTGGGTG TCACCGCCAG CCGCGGTGTC GAGCCGGTCG ACGCGCAGGT CCGGGCGCAG
GTGCTGGTGG TCGAGGACAA CCCCGTCAAC CAGGAGGTGA TGGGCCAGAT GCTGCACCGC
CTGGGTTGCC GCGTGCGGGT GGCCGGCACC GCGCTCGATG GCCTGCGGGT GCTGTGCGAG
CAGCCCGTCG ATCTGGTGCT GATGGACATC CAGATGCCGG GCATGGACGG CATCGAGGCG
CTGCACTGGA TCCGGCGCGG CGAAAGCAGC CGCTTCAAGC TGCGCACCCC CGCCAATCTG
CCGGTGGTGG CGGTGACGGC GAATGCGCTC GACGGCGACG AGGAGCGTTT CCTGGGCTTC
GGCTTCGACG CCTATCTGTC CAAGCCCTAT CGCCAGAGCC AGCTGCTCGG CATCCTGCAG
GGCGTGGTGC CGGGCCTGGT CGGCACCGGC CTGCCGGCCG ACGACAGCCG CGCTGCGCCC
GATCCGGCGC CCGCCCCGCC GGGCGAGGCC ACACTGCGCG GCGGCGCCCC GATGCTCGAC
GTGCAGGCGC TGCAGCGCTT GCGCGAACTC GATCCCGGCG GCCGGAACCG CTTGCTGGAA
CGGGTCCTGA AAGCCTTCGA TGCGTCGATC GGCCGCATGC TGACCCAGCT GGCCGAGGGC
CAGTCGGGCC AGGACGCCGC GCTGGTGCGC CACGTGCTGC ACACCCTGAA GTCGTCGTCG
CAGAGCGTGG GCGCGCTGGC GCTGGCGCAG ATGTGCGTCG ACTGCGAGGC CCAGCTGCGC
CAGGGCGTGG GGCTGGATCT GCTCGCGACC CGGCTCAATC AGCTGCAACT GGAGATGCTG
CGGGTGCAAC AGGGGCTTCA CCCCTACATC GAGGCGCAAC CGGCCTGA
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| Protein sequence | MPANVKPVET LTPDLLWRLA RAVSSTSRLL DAMTVVAPSV ARALGAQGVG LVQVMQWRPA
SSLVQPWGPE SSTDDEWIDL AQLVLVEAER CPLGRALSRG QVEYGAVGVS PQAWNWRAPG
VRQVLVLPVL TLETPDHGPG PVAVAGLAAS EPLRPTLAAL EFHDPDRFDP EVLPLLGMLA
LQLAAVARRE ADLQLARQRD EQLAQVAMLA SRTGRSTVIT DQNGRIEWVH PAFAEITGHL
PLEVQGRPLW EALARDLTRS DAAAQLRTLF AGSGAFRHEF VARRGQACAE PGQPYWLEVD
AAQVIDETTG RLQFVCLCSD ISSRKAHESG NDEQRELLAA LTENLPISLL VLDAQRMQVL
SLNRHAQIEF GVSPTPGNSG LDDMLGAGLH ERIRAELDEV LQRPGAVEHE FVWPTVEGRR
VISARHVAVQ DRHGPPRVVI TQLRDVTRQR RDELRLRESE TRYRELVETI DEGVFISNPA
RDQWYYIGPR MYQMLGLKVA DRREHPDLLQ SLVLPDDARL LAQQREHEEA LEATDVTLRI
RHPGRGLRWL RQRTRTRVLP GGETRVYGLL DDVTDERERA LQLQAARDVA EAASQAKSQF
MASMSHEIRT PMNGILGMTE LLLGTRLDDR QRRFAQAVYR SGENLLEIIN DVLDFSKIEA
GRLELAPTDF NLRTLIEDTL DLLAPRAHEK GLELSFRETG DVPANVLADP LRLRQVLTNL
VANAVKFTEH GEVTVDLRFL PRPRAGAPAM LEFRVRDTGI GMAAELLPRL FTAFTQAHGG
MARRYGGTGL GLAISRQLVE LMGGQIDVVS QPGVGSEFRF TMTFEPGSGR DSEAGELTAL
PQARVLVVED HATNRTVLDH LLSAWGLSVT LAVDGQAALE LLRNRPADQP DFDIALVDWR
MPRLDGIGFA KALRAEGLAP GTQLVMLSSA SAPDDARLAQ DAGFVRFIHK PVRKAELRQA
ILGVTASRGV EPVDAQVRAQ VLVVEDNPVN QEVMGQMLHR LGCRVRVAGT ALDGLRVLCE
QPVDLVLMDI QMPGMDGIEA LHWIRRGESS RFKLRTPANL PVVAVTANAL DGDEERFLGF
GFDAYLSKPY RQSQLLGILQ GVVPGLVGTG LPADDSRAAP DPAPAPPGEA TLRGGAPMLD
VQALQRLREL DPGGRNRLLE RVLKAFDASI GRMLTQLAEG QSGQDAALVR HVLHTLKSSS
QSVGALALAQ MCVDCEAQLR QGVGLDLLAT RLNQLQLEML RVQQGLHPYI EAQPA
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