Gene Lcho_2716 details

Gene Information

• Locus tag: Lcho_2716
• ID: 6160893
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 2989534
• End bp: 2991444
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641665493
• Product: diguanylate cyclase
• Protein accession: YP_001791746
• Protein GI: 171059397
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.0179449
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAACGAA CCAGGGAAGC GGGCGCAGTG ACGGGTGCGG GAGCGGCGGC TGCCGGTGCC 
GGTCCCGGTG CGGGGGCCGG CGCGAGTGCG TCGCTCGCCA AGGCGGCCTT GCGCCGTCTC 
GCGATGGCCA AGCTCGAGCC CACGCCGGCC AATTACGCGC GTGCGTGGCG CGAAGAAGGC 
GGCGAGGGCA TCGGTGAGGC CGCTGCCGAA CCGGCCGGCG CCGTCGCACG GGCGGCGGTG 
CAGGGCATCG TGACGCGCTT GCTGCCGGCC GGCGCGGCGC GCGACCGCCT GAGCCAGGCC 
CTGCAATCGC AGCGCTGGCA GGAGGTCGCC AGCGTCGTCG AGGCCGAGGC GCCCAGCGCC 
GCGCAGCAGG CCCAGGCCTG GGCCGAGGTG ATCGAGCGCA GCAGCCGCTG CCTCGAGCGG 
GGCTCGCGCA CCTGGCCGGT GGGGCGCCGC AAGGACAGCA TCAAGCACGT GCTCAGTTCC 
TGCCGCAGCG ATCCGCAGCG GCTGCAGCAG CGGCTGCAGA GTCTGGTCGC CAGCTGGGAC 
AGCGACGCGG CGCCGGTCGA TGCCGACGCC GAACCGTCTG CCGATGGCGC GGCCGGCGAA 
GCGCCCGTGC AGGCGGAGGC GGCCGGTGAT CCGCTGGCGC AGGCCGAGCA GGCGTTGACG 
CAGGCGATCA GCGGTGTCGC GGCCGGCGGC GGGCCGCTGT CCGCACCGAG CGGGCAGCCG 
GGCGCATGGC CGCAGGTCGT GCACCTGCTC GAAGCGTCGC TGCAGGCTGC CTTGCCACCG 
GGCGAGAGCC GCTCCGGCGA GGTCGGCGGC AAGCTGCAGC GCGCGGCCAG CGCGGTGAGA 
GAGGCCCGTC ACGAGCCGGC CGACATCGCC GAACTGCAGA GCGCCTGCGA CGACGTGCGG 
CGCGTCCTGC AGCACCGCCA CCACCTCGTC GACCAGCTCG GTGCGCTGGT CAACGAGCTG 
ACTGACGGGC TCGGTGAACT GGCCGAGGAC GACAGCTGGG TCGAAGGCCA GTGCCTGGCG 
ATGCGCGAAC AGCTCGGCAT GGGCCTGAGC AGCCGCGGCG TCAGCGCCGT CAGCGAACTG 
CTCGGCACCA CCCGCGCGCG CCAGCAGCAG TTGCGCCGCG AGCGGGCGCA GGCGCGTGAC 
GCGCTCAAGC ACCTGATCCA CCGCATGCTG CAGGACATCG GCGAACTCGG TGCCCACACC 
GGCCGCTTCA ACGAAAGCGT GGGCCGCTAC GCCGAGGTGA TCGGCTCGGC CGATTCGCTC 
GAGGGCCTGG CCGGCGTGGT GCGCGAGATG GTCGACGAGA CCCGCACGGT GCACATGCTG 
GTCAGCCAGA CCACGCAGCG CCTGCACGAT GAACACGAAC GGGCGCGCAC GATGGCCGAC 
CGGGTGGTCG AGCTCGAGGC CGAGCTGCGC CAGCTGTCGC AGGAGGTCTG CACCGACCAG 
CTCACGCAGA TCGCCAACCG GCGCGGCCTG CTGCGCTGCT TCGACGCCGA GCGTGCACGG 
GTCGAGCGCG AGTCCGCCGA CCTGGCGATC GGGCTGCTCG ACATCGACAA CTTCAAGCGC 
CTGAACGACA GCCTGGGTCA CCAGACCGGC GACGAGGCGC TGAAGTTCCT GGCCCGCCGG 
GTCGGCGAGG CCCTGCGGCC GACCGACACG CTGGCGCGCT ACGGCGGCGA GGAGTTCGTG 
GTGCTGCTGC CGGGCACACC GTCCGACGAG GCGCAGCGGG TGCTGACGCG GGTGCAGCGG 
CTGCTGTCGG CCGAGCTGTT CATGTACGAG GGCAAGCAGA GCTTCGTGAC CTTCTCGGCC 
GGCGTGACGC TGTACCGGCC GAGCGAGGCG ATCGAGGTGG CGCTGCAGCG CGCCGACGAG 
GCGCTCTACG AGGCCAAGCG CACGGGCAAG AACCGGACCT GCGTGGCCTG A 

 

Protein sequence

MERTREAGAV TGAGAAAAGA GPGAGAGASA SLAKAALRRL AMAKLEPTPA NYARAWREEG 
GEGIGEAAAE PAGAVARAAV QGIVTRLLPA GAARDRLSQA LQSQRWQEVA SVVEAEAPSA 
AQQAQAWAEV IERSSRCLER GSRTWPVGRR KDSIKHVLSS CRSDPQRLQQ RLQSLVASWD 
SDAAPVDADA EPSADGAAGE APVQAEAAGD PLAQAEQALT QAISGVAAGG GPLSAPSGQP 
GAWPQVVHLL EASLQAALPP GESRSGEVGG KLQRAASAVR EARHEPADIA ELQSACDDVR 
RVLQHRHHLV DQLGALVNEL TDGLGELAED DSWVEGQCLA MREQLGMGLS SRGVSAVSEL 
LGTTRARQQQ LRRERAQARD ALKHLIHRML QDIGELGAHT GRFNESVGRY AEVIGSADSL 
EGLAGVVREM VDETRTVHML VSQTTQRLHD EHERARTMAD RVVELEAELR QLSQEVCTDQ 
LTQIANRRGL LRCFDAERAR VERESADLAI GLLDIDNFKR LNDSLGHQTG DEALKFLARR 
VGEALRPTDT LARYGGEEFV VLLPGTPSDE AQRVLTRVQR LLSAELFMYE GKQSFVTFSA 
GVTLYRPSEA IEVALQRADE ALYEAKRTGK NRTCVA