Gene Lcho_2708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2708 
Symbol 
ID6162314 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2978431 
End bp2979417 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content66% 
IMG OID641665485 
Productmalate dehydrogenase 
Protein accessionYP_001791738 
Protein GI171059389 
COG category[C] Energy production and conversion 
COG ID[COG0039] Malate/lactate dehydrogenases 
TIGRFAM ID[TIGR01759] malate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.105677 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAGA GTCCCGTTCG TGTGGCCGTC ACCGGCGCCG CTGGCCAAAT CGGTTACGCA 
CTGCTGTTTC GCATCGCCTC GGGCGAAATG CTGGGCAAGG ACCAGCCGGT GATCCTGCAA
CTGCTGGAAG TGCCGGTCGA GAAGGCCCAG GAAGCCCTCA AGGGCGTGAT CATGGAGCTG
GAAGACTGCG CCTTCCCGCT GCTGGCCGGC ATCGAGGCCC ACTCCGACCC GATGACCGCC
TTCAAGGACA CCGACTACGC GCTGCTGGTC GGCGCTCGTC CGCGTGGCCC GGGCATGGAG
CGTGCCGACC TGCTGGCTGC CAACGCCCAG ATCTTCACGG CCCAGGGCAA GGCCCTGAAC
GCCGTCGCGT CGCGCAACGT CAAGGTGCTG GTGGTCGGCA ACCCGGCCAA CACCAACGCC
TACATCGCGA TGAAGTCGGC GCCGGACCTG CCGGCAAAGA ACTTCACCGC CATGCTGCGC
CTGGACCACA ACCGTGCAGC CTCGCAGATC GCCGCCAAGA CCGGCAAGCC GGTGGCGTCG
ATCGAGAAGC TGGCGGTGTG GGGCAACCAC TCGCCGACCA TGTATGCCGA CTACCGCTTC
GCCACCATCG GCGGCGAGTC GGTCAAGGAC ATGATCAACG ACGACGTCTG GAACCGCGAC
GTGTTCCTGC CGACCGTCGG CAAGCGCGGC GCCGCGATCA TCGCCGCCCG CGGCGTGTCG
TCGGCTGCTT CGGCCGCCAA CGCTGCCATC GATCACATGC GCGACTGGGC CCTGGGCACC
AACGGCGCCT GGGTCACGAT GGGCGTGCCG TCCAAGGGCG AATACGGCAT CCCGGCTGAA
ACGATGTTCG GCTACCCCGT CACCTGCGAA GGCGGCGAAT ACAAGATCGT CGAAGGCCTG
CCGATCGATG CCTTCTCGCA AGAGTGCATC AACAAGACCC TGGCCGAGCT CGAAGGCGAG
AAAGACGGCG TCAAGCATCT GCTCTGA
 
Protein sequence
MSKSPVRVAV TGAAGQIGYA LLFRIASGEM LGKDQPVILQ LLEVPVEKAQ EALKGVIMEL 
EDCAFPLLAG IEAHSDPMTA FKDTDYALLV GARPRGPGME RADLLAANAQ IFTAQGKALN
AVASRNVKVL VVGNPANTNA YIAMKSAPDL PAKNFTAMLR LDHNRAASQI AAKTGKPVAS
IEKLAVWGNH SPTMYADYRF ATIGGESVKD MINDDVWNRD VFLPTVGKRG AAIIAARGVS
SAASAANAAI DHMRDWALGT NGAWVTMGVP SKGEYGIPAE TMFGYPVTCE GGEYKIVEGL
PIDAFSQECI NKTLAELEGE KDGVKHLL