Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2708 |
Symbol | |
ID | 6162314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2978431 |
End bp | 2979417 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641665485 |
Product | malate dehydrogenase |
Protein accession | YP_001791738 |
Protein GI | 171059389 |
COG category | [C] Energy production and conversion |
COG ID | [COG0039] Malate/lactate dehydrogenases |
TIGRFAM ID | [TIGR01759] malate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.105677 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGA GTCCCGTTCG TGTGGCCGTC ACCGGCGCCG CTGGCCAAAT CGGTTACGCA CTGCTGTTTC GCATCGCCTC GGGCGAAATG CTGGGCAAGG ACCAGCCGGT GATCCTGCAA CTGCTGGAAG TGCCGGTCGA GAAGGCCCAG GAAGCCCTCA AGGGCGTGAT CATGGAGCTG GAAGACTGCG CCTTCCCGCT GCTGGCCGGC ATCGAGGCCC ACTCCGACCC GATGACCGCC TTCAAGGACA CCGACTACGC GCTGCTGGTC GGCGCTCGTC CGCGTGGCCC GGGCATGGAG CGTGCCGACC TGCTGGCTGC CAACGCCCAG ATCTTCACGG CCCAGGGCAA GGCCCTGAAC GCCGTCGCGT CGCGCAACGT CAAGGTGCTG GTGGTCGGCA ACCCGGCCAA CACCAACGCC TACATCGCGA TGAAGTCGGC GCCGGACCTG CCGGCAAAGA ACTTCACCGC CATGCTGCGC CTGGACCACA ACCGTGCAGC CTCGCAGATC GCCGCCAAGA CCGGCAAGCC GGTGGCGTCG ATCGAGAAGC TGGCGGTGTG GGGCAACCAC TCGCCGACCA TGTATGCCGA CTACCGCTTC GCCACCATCG GCGGCGAGTC GGTCAAGGAC ATGATCAACG ACGACGTCTG GAACCGCGAC GTGTTCCTGC CGACCGTCGG CAAGCGCGGC GCCGCGATCA TCGCCGCCCG CGGCGTGTCG TCGGCTGCTT CGGCCGCCAA CGCTGCCATC GATCACATGC GCGACTGGGC CCTGGGCACC AACGGCGCCT GGGTCACGAT GGGCGTGCCG TCCAAGGGCG AATACGGCAT CCCGGCTGAA ACGATGTTCG GCTACCCCGT CACCTGCGAA GGCGGCGAAT ACAAGATCGT CGAAGGCCTG CCGATCGATG CCTTCTCGCA AGAGTGCATC AACAAGACCC TGGCCGAGCT CGAAGGCGAG AAAGACGGCG TCAAGCATCT GCTCTGA
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Protein sequence | MSKSPVRVAV TGAAGQIGYA LLFRIASGEM LGKDQPVILQ LLEVPVEKAQ EALKGVIMEL EDCAFPLLAG IEAHSDPMTA FKDTDYALLV GARPRGPGME RADLLAANAQ IFTAQGKALN AVASRNVKVL VVGNPANTNA YIAMKSAPDL PAKNFTAMLR LDHNRAASQI AAKTGKPVAS IEKLAVWGNH SPTMYADYRF ATIGGESVKD MINDDVWNRD VFLPTVGKRG AAIIAARGVS SAASAANAAI DHMRDWALGT NGAWVTMGVP SKGEYGIPAE TMFGYPVTCE GGEYKIVEGL PIDAFSQECI NKTLAELEGE KDGVKHLL
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