Gene Lcho_2699 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2699 
Symbol 
ID6162319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2970048 
End bp2971208 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content65% 
IMG OID641665476 
Productsuccinyl-CoA synthetase, beta subunit 
Protein accessionYP_001791729 
Protein GI171059380 
COG category[C] Energy production and conversion 
COG ID[COG0045] Succinyl-CoA synthetase, beta subunit 
TIGRFAM ID[TIGR01016] succinyl-CoA synthetase, beta subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0793427 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAATCC ACGAGTACCA AGGCAAGGCG ATCCTGCGCC AGTTCGACAT TCCGGTGCCG 
CGCGGCCATG CTGCGTTCAC GGTGCAAGAG GCGGTGGAAG CCGCGCAGAA GCTCGGCGGC 
CCGGTGTGGG TCGTGAAGGC GCAGATCCAC GCCGGTGGCC GTGGCAAGGG CGGGGGCGTC 
AAGGTCGCCA AGAGCCTCGA TGACGTCAAG AAGCTCGCCG AGCAGATCCT GGGCATGCAG 
CTGGTCACGC ACCAGACCGG CCCCGAAGGC CAGAAGGTGC GCCGCCTCTA CATCGAAGAC 
GGCGCCGACA TCCAGAAGGA GTACTACGTC TCCCTGGTCA CCGACCGCCA GTCGCAGAAG 
GTCGCCTTCA TCGCATCGAG CGAAGGCGGC ATGGACATCG AGGAAGTCGC CCACTCGACG 
CCCGAGAAGA TCATCACCGA AGTGATCGAC CCGCTGACCG GCCTGGGCGC CGAGCAGGCC 
GAGAAGATCG CCCGCGCCAT CGGCCTGCCG GCCGAGTCGA TCGCGCAGGC CGTCACCCTG 
TTCCAGAACC TCTACCGCTG CTACATGGAG ACGGACGCCT CGCTGGTCGA GATCAACCCG 
CTCAACCGTG ACAGCAAGGG CGGCCTGATC GCGCTGGACG CCAAGTTCAA CTTCGACGCC 
AACGCGCTGT TCCGCCACCC CGAGATCGTC GCCTGCCGCG ACCTCGACGA AGAAGATCCG 
GCCGAAGTCG AAGCCAGCAA GTTCGATCTG GCCTACATCA GCCTGGACGG CAACATCGGC 
TGCCTGGTCA ACGGCGCGGG CCTGGCGATG GCGACGATGG ACACCATCAA GCTGTTCGGC 
GGCGAGCCGG CCAACTTCCT CGACGTCGGC GGTGGCGCCA CCGCCGAGAA GGTGACCGAA 
GCCTTCAAGA TCATGCTCAA GAACCCCGAG GTCAAGGGCA TCCTGGTCAA CATCTTCGGC 
GGCATCATGA AGTGCGACAC CATCGCCGAA GGCGTGATCA CGGCCTGCAA GGCGGTCAAC 
CTGTCGGTGC CGCTGGTGGT GCGCATGAAG GGCACCAACG AGGACCTGGG CAAGAAGATG 
CTGGCCGAAT CGGGCCTGCC GATCATCGCT GCGGACACGA TGGCCGAAGC CGCGACCGCG 
ATCGTCAACG CCGTCAAGTA A
 
Protein sequence
MKIHEYQGKA ILRQFDIPVP RGHAAFTVQE AVEAAQKLGG PVWVVKAQIH AGGRGKGGGV 
KVAKSLDDVK KLAEQILGMQ LVTHQTGPEG QKVRRLYIED GADIQKEYYV SLVTDRQSQK 
VAFIASSEGG MDIEEVAHST PEKIITEVID PLTGLGAEQA EKIARAIGLP AESIAQAVTL 
FQNLYRCYME TDASLVEINP LNRDSKGGLI ALDAKFNFDA NALFRHPEIV ACRDLDEEDP 
AEVEASKFDL AYISLDGNIG CLVNGAGLAM ATMDTIKLFG GEPANFLDVG GGATAEKVTE 
AFKIMLKNPE VKGILVNIFG GIMKCDTIAE GVITACKAVN LSVPLVVRMK GTNEDLGKKM 
LAESGLPIIA ADTMAEAATA IVNAVK