| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2687 |
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| Symbol | |
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| ID | 6162668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2955040 |
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| End bp | 2955783 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641665464 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001791717 |
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| Protein GI | 171059368 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.592025 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTACCT GGGATTGGCA GGTTTTCTGC AAGAGCACCA TCGAGGGCGA GGTGGTCGCG
GGCTGCTTGG GCAGCGGCGG CGACATCACC TACCTCGACT GGCTGCTGTC GGCCTGGGGC
TGGACGCTGT CGGTGGCGGT GCTGGCGCTG ATCGTCGCGC TGGCGGTCGG CTCGCTGATG
GGCATCTTCC GCACCACGCC CAGCCGCGCA CTGGTGGCAC TGGGCAACAG CTGGACCGAG
CTGTTCCGCA ACATCCCGCT GCTGGTGCAG ATCTTCCTCT GGTACCACGT GCTGCCGCAG
ATCTTCCCGT CGCTGCAGGC CATACCGAGC TTCATCCTGG TGGTCGTCGG GCTGGGATTC
TTCACCTCGG CGCGGGTCTC CGAGCAGGTC AAGGCCGGCA TCCAGACCCT GCCCAAGGGC
CAGCGCTACG CCGGCCTGGC GATGGGCCTG ACCTTGCCCC AGACCTACCG CTACGTGCTG
CTGCCGATGG CATTTCGCAT CGTCATCCCG CCGCTGACCA GCGAGAGCAT GAACATCATC
AAGAACTCCT CGGTGGCGTT CGCGGTGTCG GTCACCGAAC TGACGATGTT CGCCATGCAG
GCGCAGGAAG AAACCTCGCG CGGCGTCGAG ATCTACCTGG CGGTGACGGC GCTGTACTTC
ATCTCGGCCT TCTTCATCAA CCGGGTCGCG CTGTTCATCG AGCACCGCGT GCAGGTGCCC
GGCATGCTGG GAGGCGGCAA ATGA
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| Protein sequence | MATWDWQVFC KSTIEGEVVA GCLGSGGDIT YLDWLLSAWG WTLSVAVLAL IVALAVGSLM
GIFRTTPSRA LVALGNSWTE LFRNIPLLVQ IFLWYHVLPQ IFPSLQAIPS FILVVVGLGF
FTSARVSEQV KAGIQTLPKG QRYAGLAMGL TLPQTYRYVL LPMAFRIVIP PLTSESMNII
KNSSVAFAVS VTELTMFAMQ AQEETSRGVE IYLAVTALYF ISAFFINRVA LFIEHRVQVP
GMLGGGK
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