Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2686 |
Symbol | |
ID | 6162667 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2954378 |
End bp | 2955043 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641665463 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001791716 |
Protein GI | 171059367 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.589624 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCTGG ATTTCAGTTT CCTGAACTGG GACATCGTCG CCAGCTTCAT CGCCAAGGGC TTCATCTTCT CGATCCAGCT CACGCTGGTG GCGATGATCG GCGGCATCCT GCTGGGCACC CTGCTGGCGC TGATGCGGCT GTCGGGCAAG CCGTGGCTGG TGCTGCCGTC GGCGGCCTAC GTCAACACCA TGCGCAGCGT GCCGCTGGTG ATGGTGATCC TGTGGTTCTT CCTGCTGATC CCGCTGCTGA TCGGCCGGCC CATGGGCGCC GAACTGTCGG CCATCGTCAC CTTCACGCTG TTCGAGGCGG CCTACTACTC CGAGATCATG CGCGCGGGCA TCCAGAGCGT GCCGCGTGGC CAGGTGCACG CGGGCTACGC GGTGGGCATG ACCTATCGCC AGACCATGCA ACTGGTGGTG CTGCCGCAGG CCTTCCGCAA CATGCTGCCG GTGCTGCTGA CGCAGACCAT CATCCTGTTC CAGGACACCA GCCTGGTCTA CGCCATCGGC GCCTACGACC TGCTCAAGGG CTTCGAGGTC GCGGGCAAGA ACTTCAACCG GCCGGTCGAG ACCTACCTGG TCGCCGCCGT CGTCTACTTC GTGATCTGCT TTGGCCTGTC GATGCTCGTG CGTCGGCTGC AGAAGAAGAT CGCCATCATC CGCTGA
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Protein sequence | MNLDFSFLNW DIVASFIAKG FIFSIQLTLV AMIGGILLGT LLALMRLSGK PWLVLPSAAY VNTMRSVPLV MVILWFFLLI PLLIGRPMGA ELSAIVTFTL FEAAYYSEIM RAGIQSVPRG QVHAGYAVGM TYRQTMQLVV LPQAFRNMLP VLLTQTIILF QDTSLVYAIG AYDLLKGFEV AGKNFNRPVE TYLVAAVVYF VICFGLSMLV RRLQKKIAII R
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