Gene Lcho_2682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2682 
Symbol 
ID6162844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2946116 
End bp2948023 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content70% 
IMG OID641665459 
Producthistidine kinase 
Protein accessionYP_001791712 
Protein GI171059363 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.249281 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCCGC GATCGATGCT CACCGCCATG CTGGCGCCGC GGCGCTGGCG GCTGGCCTTG 
GGCGTTGCGC TGGCCGTGGC CCTCGTGGTC GGGGCGGGCG CGGCGGGCCG CCTGCTGGGC
CTTGATCGCG GCATGGCGAC CCTGCGCGCC GACACCAGCC ACAAGCTCGA CCTGTTTGCG
GCCACGGCGG CCGGCCTGGT GAACCGGCTC GAGAACGTGC CCGCCACGGT CCAGCTGAAC
CAGGACGTGA TCGCGCTGTT TCGCGGGCCT GTGTCGCCCC GGCGTGTGGC TGCGGTCAAC
GACTACCTGC TGCGCCTGAA CGCCCACCTG GGCAGCGTCG CGGTGTTCAT CGCCGACCCG
CGCGGCGAGG TGGTGGCGTC GAGCAACCAG AGCCTGCGTG ACGACAGCCT GCAAGGCCAG
GACCTGTCGT ATCGGCCGTA CTACCAGGAG GCGCTCTCGG GCCGCGTCGG GCGCCATTTC
GCGATCGGCG CCTCGCCCGA GGAGCCGGGC TATTTCTTCT CCTACCCGAT CCGCGACGGT
GAGCGTGTGG TCGGCGTGGC GGTGGCCAAG GTCGGCCTGG CGCCGATCAA CGAGGCGTTT
GCGCTGCTCG GCATGCCGGC GCTGATCGCG GATCGGAACC AGGTCGTCAT CCTGTCGTCG
CTCGAATCGT GGCGCTACAC GTCGATGAAA CCGCGCACGC TCGACGAGCG TGTCGACCTC
GAGCTCACCG GGATGTACGG CGAGCGCCGC ATCGAGGATT TCCCGCTCGG CACGAACCTG
ACTTTCGACG ACGGCACGCT GATACGCGAC AAGGGGGTGG CGCGGGGCCA GCTGTCGATC
GTCCGCGGCG ATTCGGGCCT GCTGGTCCAG GGCCGCACGC TCGATGCCAT GGGCTGGCGG
CTGCTGATCT TCTCGGACCT CGCGCCGGTG CGGTCGCAGG CGCTGGCGAT GGCGGCGCTG
TCGGCGCTCC TGGCCGCGTT CACCCTCGTG CTGCTGCTCT ACCTGAAGCA GCGGCGGCGC
ATCGCCCGGC AGAAGCTGGA GGCCAAGCTC GCGCTGGAGC GGGCCAATGC CGAGCTGGAG
TCGATGGTCG AGAAACGCAC CCGGGCGCTG AGCGACACCA ACCTCGAATT GCGGCGTGAG
ATGGCCGTGC GCGTCAAGGC AGAGGCGACG CTGCGTGCGG CGCAGGACGA GCTGGTCCAG
GCCGCCAAGC TCGCGGTGCT CGGGCAACTG GCCACCGGCA TCACGCACGA ACTGGCGCAG
CCGCTCGGCG CGATCCGCAC CCTGGCGGGC AATGCCCGCG AATTCATGCG GCGCGCGGAC
CTGGACGGCG CGCAGAGCAA CCTGGTCATC GTCGACGGCC TGGTCGACCG CATGGGCGAG
ATCATCCATC CGCTGAAGGC CTTTGCGCGC AAGTCGCCGG TGTTGCCCGA GGCGAGCGAT
GTCTCGGCCG CGCTCGGCAG TGCCTTGTTC CTGCTCGACC AGCGCATCCG CGCCGAGGGC
GTCAGCGTCG TCAACCACTG CGCCGGCGAT TCGGTGACCG CCTGGTGCAA CCGGAACCGG
CTCGAGCAGG TGCTCATCAA CCTGATCGGC AACGCGATCG ACGCGATGCG CGAGGCGCCC
ACCAAGCAAC TCCGGATCTC GGTGCGCCGA GGCAGCGACG AACGGGTGTG CATCGACGTC
GCCGACAGCG GCGAGGGGCT GGCGCCCGAG GTTCTCGACG GCCTGTTCAC GCCCTTCTTC
ACGACCAAGG CGGCCGGCAG CGGCCTCGGC CTCGGCCTGG TGATCTCGCG CGGCATCGCG
CAGGACTACG GCGGTGACCT GACGGCCGAG AATCGCCCGG AAGGCGGCGC ACGTTTCACA
CTCTGGCTTC CGTCGGGCCC ACAGCCGTCA CAGCGATCAC ACCCATGA
 
Protein sequence
MTPRSMLTAM LAPRRWRLAL GVALAVALVV GAGAAGRLLG LDRGMATLRA DTSHKLDLFA 
ATAAGLVNRL ENVPATVQLN QDVIALFRGP VSPRRVAAVN DYLLRLNAHL GSVAVFIADP
RGEVVASSNQ SLRDDSLQGQ DLSYRPYYQE ALSGRVGRHF AIGASPEEPG YFFSYPIRDG
ERVVGVAVAK VGLAPINEAF ALLGMPALIA DRNQVVILSS LESWRYTSMK PRTLDERVDL
ELTGMYGERR IEDFPLGTNL TFDDGTLIRD KGVARGQLSI VRGDSGLLVQ GRTLDAMGWR
LLIFSDLAPV RSQALAMAAL SALLAAFTLV LLLYLKQRRR IARQKLEAKL ALERANAELE
SMVEKRTRAL SDTNLELRRE MAVRVKAEAT LRAAQDELVQ AAKLAVLGQL ATGITHELAQ
PLGAIRTLAG NAREFMRRAD LDGAQSNLVI VDGLVDRMGE IIHPLKAFAR KSPVLPEASD
VSAALGSALF LLDQRIRAEG VSVVNHCAGD SVTAWCNRNR LEQVLINLIG NAIDAMREAP
TKQLRISVRR GSDERVCIDV ADSGEGLAPE VLDGLFTPFF TTKAAGSGLG LGLVISRGIA
QDYGGDLTAE NRPEGGARFT LWLPSGPQPS QRSHP