Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2682 |
Symbol | |
ID | 6162844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2946116 |
End bp | 2948023 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641665459 |
Product | histidine kinase |
Protein accession | YP_001791712 |
Protein GI | 171059363 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.249281 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCCGC GATCGATGCT CACCGCCATG CTGGCGCCGC GGCGCTGGCG GCTGGCCTTG GGCGTTGCGC TGGCCGTGGC CCTCGTGGTC GGGGCGGGCG CGGCGGGCCG CCTGCTGGGC CTTGATCGCG GCATGGCGAC CCTGCGCGCC GACACCAGCC ACAAGCTCGA CCTGTTTGCG GCCACGGCGG CCGGCCTGGT GAACCGGCTC GAGAACGTGC CCGCCACGGT CCAGCTGAAC CAGGACGTGA TCGCGCTGTT TCGCGGGCCT GTGTCGCCCC GGCGTGTGGC TGCGGTCAAC GACTACCTGC TGCGCCTGAA CGCCCACCTG GGCAGCGTCG CGGTGTTCAT CGCCGACCCG CGCGGCGAGG TGGTGGCGTC GAGCAACCAG AGCCTGCGTG ACGACAGCCT GCAAGGCCAG GACCTGTCGT ATCGGCCGTA CTACCAGGAG GCGCTCTCGG GCCGCGTCGG GCGCCATTTC GCGATCGGCG CCTCGCCCGA GGAGCCGGGC TATTTCTTCT CCTACCCGAT CCGCGACGGT GAGCGTGTGG TCGGCGTGGC GGTGGCCAAG GTCGGCCTGG CGCCGATCAA CGAGGCGTTT GCGCTGCTCG GCATGCCGGC GCTGATCGCG GATCGGAACC AGGTCGTCAT CCTGTCGTCG CTCGAATCGT GGCGCTACAC GTCGATGAAA CCGCGCACGC TCGACGAGCG TGTCGACCTC GAGCTCACCG GGATGTACGG CGAGCGCCGC ATCGAGGATT TCCCGCTCGG CACGAACCTG ACTTTCGACG ACGGCACGCT GATACGCGAC AAGGGGGTGG CGCGGGGCCA GCTGTCGATC GTCCGCGGCG ATTCGGGCCT GCTGGTCCAG GGCCGCACGC TCGATGCCAT GGGCTGGCGG CTGCTGATCT TCTCGGACCT CGCGCCGGTG CGGTCGCAGG CGCTGGCGAT GGCGGCGCTG TCGGCGCTCC TGGCCGCGTT CACCCTCGTG CTGCTGCTCT ACCTGAAGCA GCGGCGGCGC ATCGCCCGGC AGAAGCTGGA GGCCAAGCTC GCGCTGGAGC GGGCCAATGC CGAGCTGGAG TCGATGGTCG AGAAACGCAC CCGGGCGCTG AGCGACACCA ACCTCGAATT GCGGCGTGAG ATGGCCGTGC GCGTCAAGGC AGAGGCGACG CTGCGTGCGG CGCAGGACGA GCTGGTCCAG GCCGCCAAGC TCGCGGTGCT CGGGCAACTG GCCACCGGCA TCACGCACGA ACTGGCGCAG CCGCTCGGCG CGATCCGCAC CCTGGCGGGC AATGCCCGCG AATTCATGCG GCGCGCGGAC CTGGACGGCG CGCAGAGCAA CCTGGTCATC GTCGACGGCC TGGTCGACCG CATGGGCGAG ATCATCCATC CGCTGAAGGC CTTTGCGCGC AAGTCGCCGG TGTTGCCCGA GGCGAGCGAT GTCTCGGCCG CGCTCGGCAG TGCCTTGTTC CTGCTCGACC AGCGCATCCG CGCCGAGGGC GTCAGCGTCG TCAACCACTG CGCCGGCGAT TCGGTGACCG CCTGGTGCAA CCGGAACCGG CTCGAGCAGG TGCTCATCAA CCTGATCGGC AACGCGATCG ACGCGATGCG CGAGGCGCCC ACCAAGCAAC TCCGGATCTC GGTGCGCCGA GGCAGCGACG AACGGGTGTG CATCGACGTC GCCGACAGCG GCGAGGGGCT GGCGCCCGAG GTTCTCGACG GCCTGTTCAC GCCCTTCTTC ACGACCAAGG CGGCCGGCAG CGGCCTCGGC CTCGGCCTGG TGATCTCGCG CGGCATCGCG CAGGACTACG GCGGTGACCT GACGGCCGAG AATCGCCCGG AAGGCGGCGC ACGTTTCACA CTCTGGCTTC CGTCGGGCCC ACAGCCGTCA CAGCGATCAC ACCCATGA
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Protein sequence | MTPRSMLTAM LAPRRWRLAL GVALAVALVV GAGAAGRLLG LDRGMATLRA DTSHKLDLFA ATAAGLVNRL ENVPATVQLN QDVIALFRGP VSPRRVAAVN DYLLRLNAHL GSVAVFIADP RGEVVASSNQ SLRDDSLQGQ DLSYRPYYQE ALSGRVGRHF AIGASPEEPG YFFSYPIRDG ERVVGVAVAK VGLAPINEAF ALLGMPALIA DRNQVVILSS LESWRYTSMK PRTLDERVDL ELTGMYGERR IEDFPLGTNL TFDDGTLIRD KGVARGQLSI VRGDSGLLVQ GRTLDAMGWR LLIFSDLAPV RSQALAMAAL SALLAAFTLV LLLYLKQRRR IARQKLEAKL ALERANAELE SMVEKRTRAL SDTNLELRRE MAVRVKAEAT LRAAQDELVQ AAKLAVLGQL ATGITHELAQ PLGAIRTLAG NAREFMRRAD LDGAQSNLVI VDGLVDRMGE IIHPLKAFAR KSPVLPEASD VSAALGSALF LLDQRIRAEG VSVVNHCAGD SVTAWCNRNR LEQVLINLIG NAIDAMREAP TKQLRISVRR GSDERVCIDV ADSGEGLAPE VLDGLFTPFF TTKAAGSGLG LGLVISRGIA QDYGGDLTAE NRPEGGARFT LWLPSGPQPS QRSHP
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