Gene Lcho_2679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2679 
Symbol 
ID6162841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2941408 
End bp2941764 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content69% 
IMG OID641665456 
Productnitrite reductase (NAD(P)H), small subunit 
Protein accessionYP_001791709 
Protein GI171059360 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATT GGAAAGTCAT TTGCCGCGTC GAAGACATCC CCAAGCTCGG ATCGCGCCGT 
GTGGCGCGGC CGGGTTCGAC CGATGTCGCG GTGTTCCGCA ACAGCGAGGA CCAGGTCTTC 
GCGCTGCTCG ACCGCTGCCC GCACAAGGGC GGGCCGCTGA GCCAGGGCAT CGTGTTCGGC 
ACCAGCGTGG CCTGCCCGCT GCACAACTGG ACCATCGGCC TCGACAGCGG CTGCGCCCGT 
GCACCCGACG AGGGCTGCAC GCCGCGTTTC AGCGTCAAGG TCGAGGCCGA CCAGGTGATG 
CTGGACGCCG ACGAGCTGGC CAGCATCGCC GTCGGCGAGC CTGCGCCGCT GCGCTGA
 
Protein sequence
MSDWKVICRV EDIPKLGSRR VARPGSTDVA VFRNSEDQVF ALLDRCPHKG GPLSQGIVFG 
TSVACPLHNW TIGLDSGCAR APDEGCTPRF SVKVEADQVM LDADELASIA VGEPAPLR