Gene Lcho_2627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2627 
Symbol 
ID6164010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2883016 
End bp2884293 
Gene Length1278 bp 
Protein Length425 aa 
Translation table11 
GC content68% 
IMG OID641665403 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001791657 
Protein GI171059308 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCTGA CCTCACGCAC CGACCGCCGC AGCCCGCCCG GATCCAGCCC TCGCCAGATC 
AGGCACTCGG GCCTGCTGCG GCGCTGCGCG GCACGGGCTT TCGTGATCGG CGCCAGCCTG
CTGGGCCTGG CGGCTGGCCA GGCCCAGGCG GCCCCGGCAC AGCCCGCCGC CCGCTCGGCG
GCGGCCGAAA CCCAGACCCT GCGCCTGAAC GTGCCGGACG TGCAGGTGCT CGACCAGAAC
GGCAAGCGCC GCTCCTTCTA TCGTGACCTG GTCGCCGGCC GCACGGTGGC GATCAACTTC
ATCTTCACCT CCTGCACCTC GATCTGCTCG CCGCTGAGCG CGACCTTCAA GGCGATGCAG
ACCGAAGTGG CGCGGCAGGC CGGCGGCGAT GTGCACTTCA TTTCGGTCAG TGTCGATCCG
CTGAGCGACA CACCGGAAGA ACTGAACAAG TTCGCGCGCA AGTTCGAGGC CGGCCCGGGC
TGGACGTTCG TGACCGGCTC GCGCAAGTCG ATCGACGCGA TCCTGAAGGC CTACGACGTC
TCGGCCGGTG ACCCGAACGA CCACTCGCCG ATGATCTATC TGGGCCACGA ACCGAGCAAG
CGCTGGGTCC GCACCTACGG GCTGGCTTCG CCGCAGCAAC TGGTCGAGCG GCTCACCGGG
TTGTCCAAGG CCCCGTCGGC CACCGACGCC AAGGCCGCCA CCCAGGCGTC CGCCGATGCC
ACCGCGGCGC AGATCGGCGC CATGCGGCAG ATCGCCGCCC AGCAGGCCAC CCGCGCGAGC
GTGGTGTCCG CAGCCAGCGG CACACGCGGG GTCGACTACT TCACCAACCT GCCGCTGATG
ACGCAGGACC GACCGCGTGT GCGCTTCTAC GACGACCTGA TCCGCGGCCG AGTGGTGCTG
ATCACGTCGT TCTACACGAG CTGCAAGGAC GTCTGCTCGC CGGTGAGTTT CAACCTCGCC
AAGGTCCAGG AACTGCTGGC GCAGGAAGTG GACACGCCGG TGCAGCTGAT CTCGATCAGC
ACCGACTCCG GCATCGACAC GCCCGAGGTG CTGCGCGACT TTGCGCGCCG CCACAACGCG
CAGCCGGGCT GGTCGTTCGT GACCGGCAAG AAGGAAAACG TCGACTGGGT GCTGCACAAG
CTGGGCCTGT ACAACGAAAA GCCCGAGCAG CACACCGCCG TGCTCTGGGT CGGCAACGAT
CGCACCGGCG CCTGGCTGAA GCTGCACGCG CTGGCACCGC CGCAGGCCAT CCTTGAGGCC
GTGCGCAAGG TTCTTTGA
 
Protein sequence
MHLTSRTDRR SPPGSSPRQI RHSGLLRRCA ARAFVIGASL LGLAAGQAQA APAQPAARSA 
AAETQTLRLN VPDVQVLDQN GKRRSFYRDL VAGRTVAINF IFTSCTSICS PLSATFKAMQ
TEVARQAGGD VHFISVSVDP LSDTPEELNK FARKFEAGPG WTFVTGSRKS IDAILKAYDV
SAGDPNDHSP MIYLGHEPSK RWVRTYGLAS PQQLVERLTG LSKAPSATDA KAATQASADA
TAAQIGAMRQ IAAQQATRAS VVSAASGTRG VDYFTNLPLM TQDRPRVRFY DDLIRGRVVL
ITSFYTSCKD VCSPVSFNLA KVQELLAQEV DTPVQLISIS TDSGIDTPEV LRDFARRHNA
QPGWSFVTGK KENVDWVLHK LGLYNEKPEQ HTAVLWVGND RTGAWLKLHA LAPPQAILEA
VRKVL