Gene Lcho_2617 details

Gene Information

• Locus tag: Lcho_2617
• ID: 6162989
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2868600
• End bp: 2869181
• Gene Length: 582 bp
• Protein Length: 193 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 641665393
• Product: putative transmembrane protein
• Protein accession: YP_001791647
• Protein GI: 171059298

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATCA TCACCTCCGG CACGCCGCTG CGGCAATGGG CCGTGGCGTG GCAGCTGGCC 
CTCGGCCGCC CCGGCCTGCT GGGACTGGTC CTGGTGGCAC TGGCCGTATA TGCGGTCGTG 
GTGCAGGGCC CGGCCCTGCG CCAGGAGCAG CGCGAGCTGC TGGCCCGCCA GCAGGAGGCC 
GCGCGCGAGC CGGTCGTCAG CAAGCGGCGT CTCACGCCAG CCAGCACGGC GCCGCAGCTG 
CTCGACAGCC TGCCGTCGGC CAGCCAGCGT GGCGCCGACC TGGCCCGGCT GATCGAGATC 
TCGCGGCGCA CCGAGGTCGA ACTGACTCGC GGCGACTACA GCATCGAGAA GCTCAGCGCC 
AGCAACGAGC CCGGCGCGCA GCTCGACAAC GTGTCGCAGT GGCGGCTGCA GCTGCCAGTG 
CGCGGCAGCT ACAAGCAGCT GCGCCGCTTC ATCGCCGAGC TGCTCAACAG CGTGCCGCAC 
GCCGCGCTCG ACGGCCTGCA GATCGACCGC CCCGACACCC AGCAACCCTG GCTCGAGACC 
ACCCTGCGCG TGACCCTGTA CTACCGCGGA GACGGTTCAT GA 

 

Protein sequence

MKIITSGTPL RQWAVAWQLA LGRPGLLGLV LVALAVYAVV VQGPALRQEQ RELLARQQEA 
AREPVVSKRR LTPASTAPQL LDSLPSASQR GADLARLIEI SRRTEVELTR GDYSIEKLSA 
SNEPGAQLDN VSQWRLQLPV RGSYKQLRRF IAELLNSVPH AALDGLQIDR PDTQQPWLET 
TLRVTLYYRG DGS