Gene Lcho_2612 details

Gene Information

• Locus tag: Lcho_2612
• ID: 6162772
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2863849
• End bp: 2864310
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641665388
• Product: general secretion pathway protein G
• Protein accession: YP_001791642
• Protein GI: 171059293
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01710] general secretion pathway protein G; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 0.688921
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCGCAAG TTCCGTACAC CGCTGCATCC GACCTGCGCC GAACGCGCGG CCCGAGCCCG 
TTGCAGAAGG GCTTCACCTT GCTTGAACTG CTGGTGGTGA TGGTCATCAT CGGCTTGCTG 
GCCGGCATCG TCGCGCCCCA GTATTTCTCG CAGCTCGGCA AGTCCAACAC CAAGGTGGCC 
CGGGCTCAGA TCGAGGCCTT CGGGCAGGCA CTCGACCAGT ACCGGCTCGA CGTCGGCAGC 
TACCCCACCA CCGAACAGGG ACTGATCGCG CTGCGCACCG CGCCGGCCGA CACGCCGCGC 
TGGCAAGGCC CCTACCTCAA GCGCGACATC CCGGCCGATC CCTGGGGGCG TCCCTACGTG 
TACCTGGCGC CCGGCCAGAA GTCCGAATAC GACCTCTCGA GCCTGGGCAG CGACGGCCAG 
GTCGGTGGCG AAGCCGAAGC CAGCGACGTG GTGTCCTGGT AA 

 

Protein sequence

MAQVPYTAAS DLRRTRGPSP LQKGFTLLEL LVVMVIIGLL AGIVAPQYFS QLGKSNTKVA 
RAQIEAFGQA LDQYRLDVGS YPTTEQGLIA LRTAPADTPR WQGPYLKRDI PADPWGRPYV 
YLAPGQKSEY DLSSLGSDGQ VGGEAEASDV VSW