| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2609 |
|---|
| Symbol | |
|---|
| ID | 6162898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2861774 |
|---|
| End bp | 2862232 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641665385 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_001791639 |
|---|
| Protein GI | 171059290 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.56142 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG AACAGCGTCT GCAAGAACTC GGCATCGTGT TGCCGCCCGT GGCGGTGCCC
GCTGCGGCCT ATGTGCCGTT CGTGCGCACC GGCTCGCTGG TGTTCCTGTC CGGCCACATC
GCCAAGCGCG ACGGCCAGGC CTGGGTCGGC CAGCTCGGCC TCGACTGCGA CACGGCGCAA
GGCCAGCAGG CCGCTCGTGC GGTCGCCATC GACCTGCTCG GCACGCTCAA GGCCGCCATC
GGCGACCTCG AAAAGGTGCG CCGCATCGTC AAGGTGATGA GCCTGGTCAA CAGCACGGCC
ACCTACACCG AGCAGCACCT GGTGACGAAC GGCGCGTCGC AGCTGCTGGT CGAGGTGTTC
GGTGCCGAGC GCGGCGCGCA CGCCCGCAGC GCCTTCGGCG TGGCGCAGCT GCCGCTGGGC
GCCTGCGTCG AGATCGAGCT GATCGCCGAA GTGGCATGA
|
|---|
| Protein sequence | MNIEQRLQEL GIVLPPVAVP AAAYVPFVRT GSLVFLSGHI AKRDGQAWVG QLGLDCDTAQ
GQQAARAVAI DLLGTLKAAI GDLEKVRRIV KVMSLVNSTA TYTEQHLVTN GASQLLVEVF
GAERGAHARS AFGVAQLPLG ACVEIELIAE VA
|
|---|
| |