| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2583 |
|---|
| Symbol | |
|---|
| ID | 6162260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2823375 |
|---|
| End bp | 2824307 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641665358 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001791613 |
|---|
| Protein GI | 171059264 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00791641 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGC GCCCCCTGCT CGGCGTGGCG CTGATCGTCT GCGCCACGAT CTGCTTTGCC
ACGATGGACA ACGCGGTGCG CTACGCCGGC CGCATCATGC CGGTGCTGGT GATCATCTGG
CTGCGCTACA TGACGCAGAC CGTGGTGATG GCCGGCTGGC TGCTGCGCGA GGTCCTGCAC
GACGGCCGCC GCAACGCCTT CCGCACCGCC CACCCGAAGT TCCAGAGCGT GCGCGGCGCG
CTGCTGCTGG CCTCGTCGGC GTTCGGTTTC TTCGCGGTGC AGTACATGCC GGTGGCCGAG
TTCACCGCCA TCAACATGCT GACGCCGGTG CTGGTCACGC TGCTGGCCGC CTGGCTGTTG
CGTGAACGCG TCAGCCGGCT GCGCTGGCTG CTGGTGCTGG GCGCGTTCAC CGGCGCGCTG
ATCGTGATGC GCCCGGGCAG CGGGCTGTTC GGCTGGGCGG TGCTGCTGCC GCTGGGCGGG
GCCGTCACGT ACGCCAGTTT CCAGGTCCTG ACCAGCAAGC TGGCCGCGCT CGAAAGCCCC
ACCACCACGC ACTTCTACAC CGGGCTGGTC GGCACCCTGC TGCTCGCGCC GGTGGTGCTG
GCCAGCCCGA TCGACATCGA CGCCCAACTG CTCGCCGCCA GCGGCACCAC CTGGGCGCTG
CTGATCGCCA TCGGCCTGCT CGGCACGGTC GGCCACCTGC TGCTGATCCT GGCGCTGGGC
TGCGCGCCGG CCTCGCGGCT GGTGCCGTTC CTGTACGCGC AGCTGGGCAT GGCGGCGCTG
ATCGGCTGGC TGCTGTTCGG CGACCTGCCC GACGCCTGGG GCTGGATCGG CATGGGCGTG
ATCGCCCTGT GCGGCGCCAC CACCGCCTGG CTCAACGTGC GCGCCGCCGC CACGCCGCCC
TCGCCGCTGA CGAGCGATCC GGTCTGCGAT TGA
|
|---|
| Protein sequence | MQSRPLLGVA LIVCATICFA TMDNAVRYAG RIMPVLVIIW LRYMTQTVVM AGWLLREVLH
DGRRNAFRTA HPKFQSVRGA LLLASSAFGF FAVQYMPVAE FTAINMLTPV LVTLLAAWLL
RERVSRLRWL LVLGAFTGAL IVMRPGSGLF GWAVLLPLGG AVTYASFQVL TSKLAALESP
TTTHFYTGLV GTLLLAPVVL ASPIDIDAQL LAASGTTWAL LIAIGLLGTV GHLLLILALG
CAPASRLVPF LYAQLGMAAL IGWLLFGDLP DAWGWIGMGV IALCGATTAW LNVRAAATPP
SPLTSDPVCD
|
|---|
| |