Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2581 |
Symbol | |
ID | 6162258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2819195 |
End bp | 2822395 |
Gene Length | 3201 bp |
Protein Length | 1066 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641665356 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001791611 |
Protein GI | 171059262 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0010376 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGAAGA CGCCGCGTCG CGACATCGAG CCGGTGCTGG GCGCGATCGC GCTGTTCGTG CTGGTCTGCC TGGGCCTGAT GGCGTGGACG CACCTGCGCT GGAGCGCCAC GCTCGAGCAC ACCACGGCGC CGCTGGACAC GCTCAACCAG GTGCGCCAGA AGGTGCTGGC CGCCGAGCTC AACGGCGAGC GCCTGCTGGC CCGCGATCCC ACGGTGACCA CCGAGATGGT GCTGGCCGAC CTGGCGACGG CGGAGGTCCG CTCACGCCAG TTGCTGACCC AGATCGACGA GACCCGTGGC GACATCGACG GCCAGGACGG CAGCGACCTG CGCGATGCCG CCGAGCGCTA CAGCGCCAGC CTGATGCAGC TGCGCAGCGC CGCGCAGGCC CGCATCGCCG CATCGGCCGA CGACCGCGAG GGTGCGGCGG TGGCGCTGCG GGTGGCGCGC GCGCCGCTCG ATCTGGCGGC GATGGCGCTC GAGCGCCAGT TGCGGCTGCA CAGCCAGGTC CGCATCGATC ACCAGCGGTG GCTGACGCTG TTCACGCTCG GGCTGCTGTC GGCGCTGGCG ATCACGCTGA TGGGCGTGCT GATGCGCCTG AGCCGGCAGC GCAACGAGTC CGACGCGGCG CTGGCGGCCA GCGAGGCGCA CCTGCGCACC TTCATGCGGG CGATGCCCGA CGTGTCGTTC CTGTTCGACC GCGACGGGCG CTATCTAGAC GTCTTCGGTC CGGCCGAGAA ACTGGCCGAA CCGGTCGAGC GCATGCTGGG GCGGCGCATC GCCGACGTGC ACGGCGAGCG CCACGTCGAG CTGTTCATGT CGGTGATCCG GCTCGCGCTC GAGACCCGCG AGCCGCAGCG CTGCGAGTTC GCGCTCGAGG TGCAGCAGGG CACGCGCTGG TTCGAGGCGC GCGTGTGCGC GGTGCCGGAC CGCGAGCAGG TGGTCTGGGT CAGCTGGGAC ATCAGCGAGC GCCGGGCCGC CGAACTGCGC GTCACCGAGC TGACCCGGCT CTACAGCTTC ATCAGCCAGG TCAACCAGGC CTTCGTCTGG ACCCGCAGCG AGGCCGAGCT GTTCGACCGC ATCTGCAACG TCGCCATCAG CCACGGCCAC CTGCGCCTGG CGTGGGTGGT GCAGCGCGAC GGCGCGGCCA GCGCGCCGCG GGTGGCCGTG CAGCGCGGCG ACTCGACGCT CGTGCACCTG TGCGCGGCCT CGCTGCCGCC GGCCACGCAC AGCCACGCGA TGGCGGTGTC CCAATCGCTG CTGACCGGCA CGGTGCAGTG GCGCCCGGGC AGCGTCAAGC CGGCCGGCGA AGCGCCGCTC GACCTGGTCA GCGTGCCGGT GCGCAACCTC AACCAGGTGG TCGCCGCCGT GGTGCTGGTG GGCAACAAGC TCGACCCCGA GGACCGCGAG CAGCAGGCCC TGATCGCCGA GCTGGGCAGC GACATGTCGC ACGCGCTGGC GCAGTTCACG CGCGAGGCGC AATGGCAGGA ATCGCTGGCG CGCACCCGCC TGCACGCCGC CGCGCTCGAG AGCACGCAGG ACGGCGTGAT GGTCACCGAC CTGCGCCCGC GCATCGTCTC GGTCAATCGC GCCTTCACCG AGATCACCGG CTACAGCGAG ACCGAGGCGG TCGGCATGTC GCCGCGGCTG CTGCAGTCGG GCCGCCACGA GCCGGCGTTC TTCACGCGCC TGTGGAACCA GCTGCTGACC CACGGCCGCT GGCAGGGCGA GGTGCAGAAC CGCCGCAAGA ACGGCGAGCT CTACACGCAG TGGATGTCGG TCAGCACGGT GCGCGACGAA CACGATCAGC CGACCCACTA CGTCTCGGTC TTCACCGACA TCACGCCGCA GAAGGAGGCC GAGCAACGGC TGCAGCACCT GGCGCACTTC GACCCGCTCA CCCAGCTGCC CAACCGCCTG ATGGTGCTGA GCCGGCTCGA GCACGCCATC GCCTCGGCCG CACGGGCCGA GCGGCGGGTG GCGGTGCTGT TCATCGACCT CGACAACTTC AAGACCGTCA ACGACAGCCT CGGCCACAGC GCCGGCGACG ACCTGCTGCG CGCGGTGGCC GATCGCCTGG GCACCCGCAC GCGCCGCGAG GACACCCTCG GGCGGCTGGG CGGCGACGAG TTCATCCTGA TGCTCGAACA CCTGCGCGAG CCGCAGGATG CCGCCCAGGT CGCGCAGGAA CTGATCGGGC TGCTCGAGAC GCCGTTCCGG GTGGCCGGCC AGGAGGTGTA CGTGCAGGCC AGCATCGGCA TCAGCCTGTA CCCGGACGAC GGCCTCGAGG TCGGCGAACT GGTGCGCGAT GCCGACGCCG CGATGTACCA GGCCAAGCGC GCCGGCCGCG GGGTCTACCG CTTCTACACC GAGAGCCTGA CCACCGCGGC GCAGAGCCGG CTGGCGCTCG ACACCCGGCT GCGCCGCGCG CTCGAGAACA AGGAGTTCGT GCTCTGGTAC CAGCCGCTCT ACCGGCTGGC CGACCGCTGC CTGATCGGCC TGGAGGCGCT GGTGCGGCTC AACCAGCCCG GCCTGCCGCC GATCGGCCCG GCCGAGTTCA TCCCGCTGCT CGAGGAGACC GGCCAGATCA CCACGCTGGG CGCCTGGGTG ACGCAGGAAG CCTGCCGCCA GGGCCGCGCC TGGCTCGACG AGGGCCTCGA TTTCGGCCGC ATCGCGATCA ACCTGTCGCC GCAGGAAATC CGCCGCGGCC AGACCGACGA GCGGGTGCGC GAGGCACTCG AACGCAGCGG CCTGCCGGCC GAGCGCCTCG AGCTCGAGCT GACCGAATCG GGCCTGATGG AACAGGGCGA ACGCGCCGAG GCCTTCCTGC ACCGGCTGCG CGCGCTGGGC GTGCGGCTGG CGATCGACGA TTTCGGCACC GGCTATTCGT CGCTGGCGTA CCTGAAGCGC TTTCCGGTCT CCAAGCTCAA GATCGACCGC AGCTTCGTCC GCGACCTGCC GGCCGATGCC AACGACGCCC AGCTGGTGCA GACCATGGTG TCGATGGGCC GCAACCTGGG CATCTCGGTG CTGGCCGAAG GGGTCGAGAC CGAAGCCCAG TTCGACTACC TGCGCAGCCT CGGCTGCGAC GCGGCGCAGG GCTATTTCTT CAGCCCGCCG CGCCCGGCCG ACGAGGCCCG GCACTGGCTG CGGCCACTGG CGGCGGCGCA GGCAACGCCC GTCCAGGCCG AACCGCCGTG A
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Protein sequence | MKKTPRRDIE PVLGAIALFV LVCLGLMAWT HLRWSATLEH TTAPLDTLNQ VRQKVLAAEL NGERLLARDP TVTTEMVLAD LATAEVRSRQ LLTQIDETRG DIDGQDGSDL RDAAERYSAS LMQLRSAAQA RIAASADDRE GAAVALRVAR APLDLAAMAL ERQLRLHSQV RIDHQRWLTL FTLGLLSALA ITLMGVLMRL SRQRNESDAA LAASEAHLRT FMRAMPDVSF LFDRDGRYLD VFGPAEKLAE PVERMLGRRI ADVHGERHVE LFMSVIRLAL ETREPQRCEF ALEVQQGTRW FEARVCAVPD REQVVWVSWD ISERRAAELR VTELTRLYSF ISQVNQAFVW TRSEAELFDR ICNVAISHGH LRLAWVVQRD GAASAPRVAV QRGDSTLVHL CAASLPPATH SHAMAVSQSL LTGTVQWRPG SVKPAGEAPL DLVSVPVRNL NQVVAAVVLV GNKLDPEDRE QQALIAELGS DMSHALAQFT REAQWQESLA RTRLHAAALE STQDGVMVTD LRPRIVSVNR AFTEITGYSE TEAVGMSPRL LQSGRHEPAF FTRLWNQLLT HGRWQGEVQN RRKNGELYTQ WMSVSTVRDE HDQPTHYVSV FTDITPQKEA EQRLQHLAHF DPLTQLPNRL MVLSRLEHAI ASAARAERRV AVLFIDLDNF KTVNDSLGHS AGDDLLRAVA DRLGTRTRRE DTLGRLGGDE FILMLEHLRE PQDAAQVAQE LIGLLETPFR VAGQEVYVQA SIGISLYPDD GLEVGELVRD ADAAMYQAKR AGRGVYRFYT ESLTTAAQSR LALDTRLRRA LENKEFVLWY QPLYRLADRC LIGLEALVRL NQPGLPPIGP AEFIPLLEET GQITTLGAWV TQEACRQGRA WLDEGLDFGR IAINLSPQEI RRGQTDERVR EALERSGLPA ERLELELTES GLMEQGERAE AFLHRLRALG VRLAIDDFGT GYSSLAYLKR FPVSKLKIDR SFVRDLPADA NDAQLVQTMV SMGRNLGISV LAEGVETEAQ FDYLRSLGCD AAQGYFFSPP RPADEARHWL RPLAAAQATP VQAEPP
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