Gene Lcho_2581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2581 
Symbol 
ID6162258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2819195 
End bp2822395 
Gene Length3201 bp 
Protein Length1066 aa 
Translation table11 
GC content71% 
IMG OID641665356 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001791611 
Protein GI171059262 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0010376 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAGAAGA CGCCGCGTCG CGACATCGAG CCGGTGCTGG GCGCGATCGC GCTGTTCGTG 
CTGGTCTGCC TGGGCCTGAT GGCGTGGACG CACCTGCGCT GGAGCGCCAC GCTCGAGCAC
ACCACGGCGC CGCTGGACAC GCTCAACCAG GTGCGCCAGA AGGTGCTGGC CGCCGAGCTC
AACGGCGAGC GCCTGCTGGC CCGCGATCCC ACGGTGACCA CCGAGATGGT GCTGGCCGAC
CTGGCGACGG CGGAGGTCCG CTCACGCCAG TTGCTGACCC AGATCGACGA GACCCGTGGC
GACATCGACG GCCAGGACGG CAGCGACCTG CGCGATGCCG CCGAGCGCTA CAGCGCCAGC
CTGATGCAGC TGCGCAGCGC CGCGCAGGCC CGCATCGCCG CATCGGCCGA CGACCGCGAG
GGTGCGGCGG TGGCGCTGCG GGTGGCGCGC GCGCCGCTCG ATCTGGCGGC GATGGCGCTC
GAGCGCCAGT TGCGGCTGCA CAGCCAGGTC CGCATCGATC ACCAGCGGTG GCTGACGCTG
TTCACGCTCG GGCTGCTGTC GGCGCTGGCG ATCACGCTGA TGGGCGTGCT GATGCGCCTG
AGCCGGCAGC GCAACGAGTC CGACGCGGCG CTGGCGGCCA GCGAGGCGCA CCTGCGCACC
TTCATGCGGG CGATGCCCGA CGTGTCGTTC CTGTTCGACC GCGACGGGCG CTATCTAGAC
GTCTTCGGTC CGGCCGAGAA ACTGGCCGAA CCGGTCGAGC GCATGCTGGG GCGGCGCATC
GCCGACGTGC ACGGCGAGCG CCACGTCGAG CTGTTCATGT CGGTGATCCG GCTCGCGCTC
GAGACCCGCG AGCCGCAGCG CTGCGAGTTC GCGCTCGAGG TGCAGCAGGG CACGCGCTGG
TTCGAGGCGC GCGTGTGCGC GGTGCCGGAC CGCGAGCAGG TGGTCTGGGT CAGCTGGGAC
ATCAGCGAGC GCCGGGCCGC CGAACTGCGC GTCACCGAGC TGACCCGGCT CTACAGCTTC
ATCAGCCAGG TCAACCAGGC CTTCGTCTGG ACCCGCAGCG AGGCCGAGCT GTTCGACCGC
ATCTGCAACG TCGCCATCAG CCACGGCCAC CTGCGCCTGG CGTGGGTGGT GCAGCGCGAC
GGCGCGGCCA GCGCGCCGCG GGTGGCCGTG CAGCGCGGCG ACTCGACGCT CGTGCACCTG
TGCGCGGCCT CGCTGCCGCC GGCCACGCAC AGCCACGCGA TGGCGGTGTC CCAATCGCTG
CTGACCGGCA CGGTGCAGTG GCGCCCGGGC AGCGTCAAGC CGGCCGGCGA AGCGCCGCTC
GACCTGGTCA GCGTGCCGGT GCGCAACCTC AACCAGGTGG TCGCCGCCGT GGTGCTGGTG
GGCAACAAGC TCGACCCCGA GGACCGCGAG CAGCAGGCCC TGATCGCCGA GCTGGGCAGC
GACATGTCGC ACGCGCTGGC GCAGTTCACG CGCGAGGCGC AATGGCAGGA ATCGCTGGCG
CGCACCCGCC TGCACGCCGC CGCGCTCGAG AGCACGCAGG ACGGCGTGAT GGTCACCGAC
CTGCGCCCGC GCATCGTCTC GGTCAATCGC GCCTTCACCG AGATCACCGG CTACAGCGAG
ACCGAGGCGG TCGGCATGTC GCCGCGGCTG CTGCAGTCGG GCCGCCACGA GCCGGCGTTC
TTCACGCGCC TGTGGAACCA GCTGCTGACC CACGGCCGCT GGCAGGGCGA GGTGCAGAAC
CGCCGCAAGA ACGGCGAGCT CTACACGCAG TGGATGTCGG TCAGCACGGT GCGCGACGAA
CACGATCAGC CGACCCACTA CGTCTCGGTC TTCACCGACA TCACGCCGCA GAAGGAGGCC
GAGCAACGGC TGCAGCACCT GGCGCACTTC GACCCGCTCA CCCAGCTGCC CAACCGCCTG
ATGGTGCTGA GCCGGCTCGA GCACGCCATC GCCTCGGCCG CACGGGCCGA GCGGCGGGTG
GCGGTGCTGT TCATCGACCT CGACAACTTC AAGACCGTCA ACGACAGCCT CGGCCACAGC
GCCGGCGACG ACCTGCTGCG CGCGGTGGCC GATCGCCTGG GCACCCGCAC GCGCCGCGAG
GACACCCTCG GGCGGCTGGG CGGCGACGAG TTCATCCTGA TGCTCGAACA CCTGCGCGAG
CCGCAGGATG CCGCCCAGGT CGCGCAGGAA CTGATCGGGC TGCTCGAGAC GCCGTTCCGG
GTGGCCGGCC AGGAGGTGTA CGTGCAGGCC AGCATCGGCA TCAGCCTGTA CCCGGACGAC
GGCCTCGAGG TCGGCGAACT GGTGCGCGAT GCCGACGCCG CGATGTACCA GGCCAAGCGC
GCCGGCCGCG GGGTCTACCG CTTCTACACC GAGAGCCTGA CCACCGCGGC GCAGAGCCGG
CTGGCGCTCG ACACCCGGCT GCGCCGCGCG CTCGAGAACA AGGAGTTCGT GCTCTGGTAC
CAGCCGCTCT ACCGGCTGGC CGACCGCTGC CTGATCGGCC TGGAGGCGCT GGTGCGGCTC
AACCAGCCCG GCCTGCCGCC GATCGGCCCG GCCGAGTTCA TCCCGCTGCT CGAGGAGACC
GGCCAGATCA CCACGCTGGG CGCCTGGGTG ACGCAGGAAG CCTGCCGCCA GGGCCGCGCC
TGGCTCGACG AGGGCCTCGA TTTCGGCCGC ATCGCGATCA ACCTGTCGCC GCAGGAAATC
CGCCGCGGCC AGACCGACGA GCGGGTGCGC GAGGCACTCG AACGCAGCGG CCTGCCGGCC
GAGCGCCTCG AGCTCGAGCT GACCGAATCG GGCCTGATGG AACAGGGCGA ACGCGCCGAG
GCCTTCCTGC ACCGGCTGCG CGCGCTGGGC GTGCGGCTGG CGATCGACGA TTTCGGCACC
GGCTATTCGT CGCTGGCGTA CCTGAAGCGC TTTCCGGTCT CCAAGCTCAA GATCGACCGC
AGCTTCGTCC GCGACCTGCC GGCCGATGCC AACGACGCCC AGCTGGTGCA GACCATGGTG
TCGATGGGCC GCAACCTGGG CATCTCGGTG CTGGCCGAAG GGGTCGAGAC CGAAGCCCAG
TTCGACTACC TGCGCAGCCT CGGCTGCGAC GCGGCGCAGG GCTATTTCTT CAGCCCGCCG
CGCCCGGCCG ACGAGGCCCG GCACTGGCTG CGGCCACTGG CGGCGGCGCA GGCAACGCCC
GTCCAGGCCG AACCGCCGTG A
 
Protein sequence
MKKTPRRDIE PVLGAIALFV LVCLGLMAWT HLRWSATLEH TTAPLDTLNQ VRQKVLAAEL 
NGERLLARDP TVTTEMVLAD LATAEVRSRQ LLTQIDETRG DIDGQDGSDL RDAAERYSAS
LMQLRSAAQA RIAASADDRE GAAVALRVAR APLDLAAMAL ERQLRLHSQV RIDHQRWLTL
FTLGLLSALA ITLMGVLMRL SRQRNESDAA LAASEAHLRT FMRAMPDVSF LFDRDGRYLD
VFGPAEKLAE PVERMLGRRI ADVHGERHVE LFMSVIRLAL ETREPQRCEF ALEVQQGTRW
FEARVCAVPD REQVVWVSWD ISERRAAELR VTELTRLYSF ISQVNQAFVW TRSEAELFDR
ICNVAISHGH LRLAWVVQRD GAASAPRVAV QRGDSTLVHL CAASLPPATH SHAMAVSQSL
LTGTVQWRPG SVKPAGEAPL DLVSVPVRNL NQVVAAVVLV GNKLDPEDRE QQALIAELGS
DMSHALAQFT REAQWQESLA RTRLHAAALE STQDGVMVTD LRPRIVSVNR AFTEITGYSE
TEAVGMSPRL LQSGRHEPAF FTRLWNQLLT HGRWQGEVQN RRKNGELYTQ WMSVSTVRDE
HDQPTHYVSV FTDITPQKEA EQRLQHLAHF DPLTQLPNRL MVLSRLEHAI ASAARAERRV
AVLFIDLDNF KTVNDSLGHS AGDDLLRAVA DRLGTRTRRE DTLGRLGGDE FILMLEHLRE
PQDAAQVAQE LIGLLETPFR VAGQEVYVQA SIGISLYPDD GLEVGELVRD ADAAMYQAKR
AGRGVYRFYT ESLTTAAQSR LALDTRLRRA LENKEFVLWY QPLYRLADRC LIGLEALVRL
NQPGLPPIGP AEFIPLLEET GQITTLGAWV TQEACRQGRA WLDEGLDFGR IAINLSPQEI
RRGQTDERVR EALERSGLPA ERLELELTES GLMEQGERAE AFLHRLRALG VRLAIDDFGT
GYSSLAYLKR FPVSKLKIDR SFVRDLPADA NDAQLVQTMV SMGRNLGISV LAEGVETEAQ
FDYLRSLGCD AAQGYFFSPP RPADEARHWL RPLAAAQATP VQAEPP