Gene Lcho_2575 details

Gene Information

• Locus tag: Lcho_2575
• ID: 6162510
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2811002
• End bp: 2811547
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641665350
• Product: GrpE protein
• Protein accession: YP_001791605
• Protein GI: 171059256
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0576] Molecular chaperone GrpE (heat shock protein)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.000160939
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCCAGACA CGCCCAAAGC CGACATCCCA TCCGACAACG CCGCCCTGGA AGCCCAGGGT 
ATCGCCTCAG AGCTAATCGA CGACAGCGCC GCGCGCATCG CCGAACTCGA AGCCAAGAAC 
GCGGATCTGG CTGATGCCTA CCTGCGCGCC AAGGCCGAAG CCGACAACAT CCGCCGTCGT 
GCCGATGACG ACATCGCCAA GTCGCGCAAG TTTGCAGTCG AATCCTTCGC CGAGAGCCTG 
CTGCCGGTGA AAGACAGCCT GGAGGCCGCG ATTGTGAGCC ACGCCGCCGG CAAGGGCTCG 
CCCGAACAGG TGATCGAGGG CGTGCACGCC ACGCTGCGCC AGCTCGGCCA GGCGCTCGAG 
CGCAACAAGG TGCTCGAGGT CAATCCGCCG GCCGGCACCA AGTTCGACCC GCACCAGCAC 
CAGGCCATCA GCGTGGTGCC CGCCGAACAA GAGGCCAACA CGGTGGTGGC CGTGCTGCAG 
AAGGGCTACC TGATCGCCGA CCGCGTGCTG CGGCCCGCGC TGGTGACCGT CGCCGCCGCC 
AAATGA 

 

Protein sequence

MPDTPKADIP SDNAALEAQG IASELIDDSA ARIAELEAKN ADLADAYLRA KAEADNIRRR 
ADDDIAKSRK FAVESFAESL LPVKDSLEAA IVSHAAGKGS PEQVIEGVHA TLRQLGQALE 
RNKVLEVNPP AGTKFDPHQH QAISVVPAEQ EANTVVAVLQ KGYLIADRVL RPALVTVAAA 
K