| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2571 |
|---|
| Symbol | |
|---|
| ID | 6162506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2806319 |
|---|
| End bp | 2807788 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641665346 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_001791601 |
|---|
| Protein GI | 171059252 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.000673908 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGG CGCGGCTGTC GATGCGCAGC CGGCTGCTGC TGGGCATCCT GCTGCCGGTC
GGCCTGCTGG TGGCGATCAA CACCTGGAGC CTCTACCACC AGGCCCTGCG CTCGGCCGAC
ACCGCCTACG ACCGCACGCT GCTGGCGTCG GCCAAGTCGA TCGGCGAACT GCTCGAAGTG
ACCGGCAACA GCGACGCCCT GCAGGTGCGC GCCAACGTGC CCTACTCGGC GCTCGAGGCC
TTCGAGGCCG ACAACCGCAG CCGCATCTTC TTCAAGGTGT CGGGCTTCGG CGGCGAGATG
GTCTCGGGTT TCGAGGACCT GCCGGCCTGG CAGGGCCGGA TTCCGGTGCG CGGGCCCTAC
GCGGCGCTGG TCGATTTCTA CGACGACCAC TACCGCGGCG AGCCGGTGCG GGTGGCCGTG
CTGCTGCAGC CGGTGTCGGG CCAGGCCGGC CAGGGCATGG CGACCATCCA GGTGGCCGAG
ACGCTGGAGC TGCGCCAGAC GCTGGCGCGC CAGATGCTGT TCGACACCCT GTGGCGCCAG
GCCGCGCTGC TGGGGGTGAT CAGCCTCGTG GTGTCGTGGG TGGTGCAGCG CGCTACCCGG
CCGGTGCGCG AGCTCAGTGC GGCCATCACG GCGCGCCCGG CCGATGACCT GTCGCCGATC
GACACCACCG GCACGCCGCG CGAACTGCAG CCGCTGATCG ACGCCACCAA CGACGCGATG
GCCCGCCTGG CCGGTCTGCT GACGCGCCAG AAACGCTTCG TGCGCGACGC CTCGCACCAG
CTGCGCACGC CGCTGGCCGT GCTCAAGACC CAGGTGCAGT CGGCGCTGCG CGGCGACCTG
CCGGCGCACG AGGCGCTGCG CGAGATCCGC GCCACGGTGG ACGGCGCCAC GCGCCTGGCC
AACCAGATGC TGGCGCTCGC CAAGCTCGAT CAGGTGCAGA ACGACCAGGC CGCCGAAAGC
ATCGACCTGG CCGCGCTGGT GCGCGACGTG GCGCTCGACC TGGCGCCGCT GATCGCCGAC
AAGGGCCTCG ACTTCGAGCT CGCCGCCGAC GCGCCGGTTC CGGTGCGCGC GCGCGACTGG
ATGCTGCGCG AGCTGACACG CAACCTGCTG CACAACGCCA TCCGCGCCAC GCCGGCGGGC
GGGGCGCTGA GCGTGGCGGT GCTTGCGCTG ACGCCGCCCA CCGCGGCCGA CGGGCCCAGC
GCCGACCCGA TCGCCCGGCT GCAGATCCGC GACAGCGGCC CCGGCATCTC GGCGGCGCAG
CGCGAGCACC TGTTCGAGCC CTTCCACACC GGCCATCCGA GCAGCGGCAG CGGCCTGGGG
CTGAACATCT GCCGCGAGGT CTGCGAACGG CTCGGCGGGC AGATCCGGCT CGACAACCGG
GTGGCGGCCG ATGGCTCGGG CGCCGCACTC GGCCTGGACG CGCGTGTGGA CTTGCCGCTG
CACGCTGCCG CGCCACAATC GGCGGCGTGA
|
|---|
| Protein sequence | MRLARLSMRS RLLLGILLPV GLLVAINTWS LYHQALRSAD TAYDRTLLAS AKSIGELLEV
TGNSDALQVR ANVPYSALEA FEADNRSRIF FKVSGFGGEM VSGFEDLPAW QGRIPVRGPY
AALVDFYDDH YRGEPVRVAV LLQPVSGQAG QGMATIQVAE TLELRQTLAR QMLFDTLWRQ
AALLGVISLV VSWVVQRATR PVRELSAAIT ARPADDLSPI DTTGTPRELQ PLIDATNDAM
ARLAGLLTRQ KRFVRDASHQ LRTPLAVLKT QVQSALRGDL PAHEALREIR ATVDGATRLA
NQMLALAKLD QVQNDQAAES IDLAALVRDV ALDLAPLIAD KGLDFELAAD APVPVRARDW
MLRELTRNLL HNAIRATPAG GALSVAVLAL TPPTAADGPS ADPIARLQIR DSGPGISAAQ
REHLFEPFHT GHPSSGSGLG LNICREVCER LGGQIRLDNR VAADGSGAAL GLDARVDLPL
HAAAPQSAA
|
|---|
| |