| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2564 |
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| Symbol | |
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| ID | 6162983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2799546 |
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| End bp | 2800241 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641665339 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001791594 |
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| Protein GI | 171059245 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0054388 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGTCC TTGCCCTCAC CCTCGACCTC GATGACACGC TGTGGCCGAT CGCGCCTGTG
ATCGAGCGCG CCGAGCAGGT CACGCACGCG TGGCTCGAGC GGCAGGCCCC CGCCACCGCG
CTGCGCTTCG GCGTGCCGGC GATGCGTGAG CTGCGCGCCG ACGTGTCGCG CCGCCATCCC
CGGCTGGCTC ACGACCTGAG CCAGCTGCGC CTGATCGCGT TGCGCGAGTC GCTGCGGGCC
AGCGGCGACG ATCCGGCGCT GGCCGAGCCG GCCTTCGAGG TGTTCTTCGC GCAGCGCCAG
CAGGTCGAGT TCTATGCCGA CGTGATCCCC GCGCTCGACC GCCTGGCCGC GCGCTTCCCG
CTGCTGGCGC TCAGCAACGG CAATGCCGAG CTGGCCGCGA CCGGGCTGTC ACGCTGGTTC
TGCGGCTCGG TGAGCGCCCG CTCGGCCGGC GTGGCCAAGC CGGATGTGCG GATCTTCCGC
AGTGCCTGCG AACAGCTCGG CCGCGCGCCG GCTCAGGTCA TGCACATCGG CGACGACCTT
GCCCTGGATG TCGACGGCGC ACGCGCCGCC GGCCTGCAGA CCGCGTGGGT ACGGCGTGAC
GGGGTGCAGC AGCCTGGAGG GTCGACGCAG GAGGCCGGGC GCCGGCACCT GCAGGTGAGC
GACCTGCTGG CGCTGGCCGA TCTGCTCGGC GCCTGA
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| Protein sequence | MTVLALTLDL DDTLWPIAPV IERAEQVTHA WLERQAPATA LRFGVPAMRE LRADVSRRHP
RLAHDLSQLR LIALRESLRA SGDDPALAEP AFEVFFAQRQ QVEFYADVIP ALDRLAARFP
LLALSNGNAE LAATGLSRWF CGSVSARSAG VAKPDVRIFR SACEQLGRAP AQVMHIGDDL
ALDVDGARAA GLQTAWVRRD GVQQPGGSTQ EAGRRHLQVS DLLALADLLG A
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