| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2562 |
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| Symbol | |
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| ID | 6163162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2796202 |
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| End bp | 2798466 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641665337 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001791592 |
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| Protein GI | 171059243 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0018126 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGCGA AGAAGAGCGC CCCCGCCACG TCCACCCTGA CCGACGACAA CCTGCCGGCC
GCTGCTGCAC CCGAAGGCAA GACCGTGCGC GTCGTCCGGG TGGCCAAGGC TGCCAAGGCT
GCAGCGCCCG GCGAAGAAAC GACCCCCACC GTTGCGGTCA AGCGCGGACG CAAGCCCAAG
GCAGCCGCCG AGCCGGCCAA GAAGGCCGAG TCCAAGCCTG CGCTGGGGGG CGAGGAGGAT
TTCGCCGACA TCGAAGCCGA ACTCGAAGGC GAGGTCGAAG TCGAGGCGGA GGGCGAAGTC
GAGACGGTCG CGCTCGAAGG CACGGGTGAA GTCACGCCCA AGGCCAAGCC GCTGCGCATG
AAGGTCAGCC GGGCCAAGGA ACGCGCGCTG ATGCGCGAGT TCGGCCTCGA CGAGACCATG
CTGACCGAAG AGGAAGTCGC CAAGCGCCGC TCGGAGCTCA AGACCCTCAT CAAGATGGGC
AAGACGCGCG GTTTCCTGAC GCATCAGGAA ATCAACGACC ACCTGCCCGA GAAGCTGGTC
GAGGCCGAGA TCCTCGAAGC CATCGTGTCG ATGCTCAACG ACATGGGCAT CGCGGTCTAC
GAGCAGGCGC CCGACGCGGC CACGCTGCTG ATCGCCGGCG GCGGCACCAC CACCTCGACC
GAAGAAGAAG CCGAAGAAGC CGCCGAAGCC GCGCTGTCGA CGGTCGACTC CGAGTTCGGC
CGCACGACCG ACCCGGTGCG CATGTACATG CGCGAGATGG GCACCGTCGA GCTGCTGACG
CGTGAAGGCG AGATCGAGAT CGCCAAGCGC ATCGAAGGCG GTCTGCAGGC GATGATGCTG
GCGATTTCGG CCTCGCCGGC CACCATCGCC GAAGTGCTGG AAATGGCCAA CAAGATCCGC
GCCGGCACGG ACCCGATCTC GAGCGTGGTC GACGGCTTCG TGGCCGCCGA CGAGGCCGAC
GACTACGTCG CCGAAGAAGA CTTCGACGAG TTCGACGAAG AAGAAGACGA CGACGGCAAC
GGCGGCTCCA AGGCCCTGAC CAAGAAGCTC GAGGAGCTGA AGAACCAGGC GCTGGTGAAG
TTCGACGCGC TGCAGCTCGA CTTCGACAAG ATGCGCAAGG CCTACGACAA GGACGGCTAC
AAGTCGCCGG CCTACAACAA GGCGCAGGAA GCGATCAGCG GCCAGCTGAT GACGGTGCGC
TTCACGGTCA AGACGATCGA GAAGCTGTGC GACCTGCTGC GCTCGCAGGT GGACGACATC
CGGCGCTTCG AGCGCGAGCT GCGCAAGATC GTGGTCGACC GCTGCGGCAT GCCGCAGGAG
TACTTCATCA AGAGCTTCCC GCCCAATATC CTGAACCTGG AGTGGGCCGA GAACGAGATC
GCCGCCAACA AGCCCTACAG CGCCGTGATG AGCCGCAACC TGCCGGCCAT CCAGGAACTG
CAGCAGAAGC TGACCGATCT GCAGACCAAG GCGGTGGTGC CGATCGACGA TCTCAAGCAG
ATCAACCGGC GCATGAACGA GGGCGAAGCC AGTTCGCGCG AAGCCAAGCG CGAGATGATC
GAGGCCAACC TGCGCCTCGT GATCTCCATC GCCAAGAAGT ACACCAACCG CGGCCTGCAG
TTCCTCGACC TGATCCAGGA AGGCAACATC GGCCTGATGA AGGCGGTCGA CAAGTTCGAA
TACCGCCGCG GCTACAAGTT CTCGACCTAC GCGACGTGGT GGATCCGTCA GGCCATCACC
CGCTCGATCG CCGATCAGGC CCGCACCATC CGCATTCCGG TGCACATGAT CGAGACGATC
AACAAGATGA ACCGTCTCTC GCGTCAGCAC TTGCAGGAGT TCGGTTTCGA GCCCGACGCG
CCTTCTCTGG CCGAGAAGAT GGAGATGCCC GAGGACAAGA TCCGCAAGAT CATGAAGATC
GCGAAAGAGC CGATCTCCAT GGAAACGCCG ATCGGCGACG ACGACGATTC GCATCTGGGC
GACTTCATCG AGGACACCAA CAACACCGCG CCGATCGAGG CGGCGATGCA GTCGGGCCTG
CGCGACGTGG TGCGCGACAT CCTCGACAGC CTGACGCCGC GCGAGGCCAA GGTGCTGCGC
ATGCGCTTCG GCATCGAGAT GAGCACCGAC CACACGCTCG AAGAAGTCGG CAAGCAGTTC
GACGTGACGC GCGAGCGCAT CCGCCAGATC GAGGCCAAGG CGATCCGCAA GCTCAAGCAC
CCGAGCCGTT CGGACAAGCT GCGCACCTAT CTGGACAATC TGTAA
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| Protein sequence | MTAKKSAPAT STLTDDNLPA AAAPEGKTVR VVRVAKAAKA AAPGEETTPT VAVKRGRKPK
AAAEPAKKAE SKPALGGEED FADIEAELEG EVEVEAEGEV ETVALEGTGE VTPKAKPLRM
KVSRAKERAL MREFGLDETM LTEEEVAKRR SELKTLIKMG KTRGFLTHQE INDHLPEKLV
EAEILEAIVS MLNDMGIAVY EQAPDAATLL IAGGGTTTST EEEAEEAAEA ALSTVDSEFG
RTTDPVRMYM REMGTVELLT REGEIEIAKR IEGGLQAMML AISASPATIA EVLEMANKIR
AGTDPISSVV DGFVAADEAD DYVAEEDFDE FDEEEDDDGN GGSKALTKKL EELKNQALVK
FDALQLDFDK MRKAYDKDGY KSPAYNKAQE AISGQLMTVR FTVKTIEKLC DLLRSQVDDI
RRFERELRKI VVDRCGMPQE YFIKSFPPNI LNLEWAENEI AANKPYSAVM SRNLPAIQEL
QQKLTDLQTK AVVPIDDLKQ INRRMNEGEA SSREAKREMI EANLRLVISI AKKYTNRGLQ
FLDLIQEGNI GLMKAVDKFE YRRGYKFSTY ATWWIRQAIT RSIADQARTI RIPVHMIETI
NKMNRLSRQH LQEFGFEPDA PSLAEKMEMP EDKIRKIMKI AKEPISMETP IGDDDDSHLG
DFIEDTNNTA PIEAAMQSGL RDVVRDILDS LTPREAKVLR MRFGIEMSTD HTLEEVGKQF
DVTRERIRQI EAKAIRKLKH PSRSDKLRTY LDNL
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