Gene Lcho_2557 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2557 
Symbol 
ID6163157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2789610 
End bp2790425 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content74% 
IMG OID641665332 
Product3-deoxy-D-manno-octulosonate cytidylyltransferase 
Protein accessionYP_001791587 
Protein GI171059238 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase 
TIGRFAM ID[TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00206536 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCACGC CGGGCCGATC CGATCAGGAC GCGGGGGCAG GAACGCCGCC GGTGGATCCG 
GCCGTGAGCT TCACCGTGCT GGTGCCCGCC CGGCTGGCGT CGACCCGCCT GCCGCGCAAG
GCGCTGGCCG ATCTGGGTGG CCTGCCGATG GTCGTGCGGG TGGCGCAGCG TTGCGCGCTC
AGCGGCGCCA GCGCGGTCGT CGTCGCCACC GACAGCGAGG AGATCCGCGC CGCCTGCGCC
GCCCACGGCG TGCGCGCCCT GATGACCCGC GCCGATCACC CGACCGGCAG CGACCGCCTG
GCCGAGGCCT GCGTGCAGCT CGGCCTGGAC GGGCGCGACA TCGTCGTCAA CGTGCAGGGC
GACGAGCCGC TGATCGAGCC CGGCCTGATC GACGCCTGCG CCGGCCTGCT GGCGCAGCGC
AGCGACTGCG TGATGAGCAC CGCCGCGCAC GCGCTCGACG ACGTCGAGGA ATACGGCAAC
CCGAATGTCG TCAAGGTGGT GACCGACGCA GTCGGGCGGG CGCTGTACTT CTCGCGCGCG
CCGCTGCCGT GGTGGCGCGA CGGCTATGCC TCCGGCGTGC TGGCGCTGCC CGATCCGGCG
CCGCTGCGCC ACATCGGCAT CTACGGCTAC AGCGCCGGTT TCCTGCGGCG CTTCCCGAGC
CTGCCCGAGA GCCCGCTCGA GCGCATCGAG TCGCTCGAAC AGCTGCGCGT GCTCTGGCAC
GGCGAACGCA TCGCGGTGCA CCTGAGCGCG GTGCGCCCCG GGCCCGGCAT CGACACCCCC
GAAGACCTCG AACGCGTGCG CCGCCACTTC GGCTGA
 
Protein sequence
MSTPGRSDQD AGAGTPPVDP AVSFTVLVPA RLASTRLPRK ALADLGGLPM VVRVAQRCAL 
SGASAVVVAT DSEEIRAACA AHGVRALMTR ADHPTGSDRL AEACVQLGLD GRDIVVNVQG
DEPLIEPGLI DACAGLLAQR SDCVMSTAAH ALDDVEEYGN PNVVKVVTDA VGRALYFSRA
PLPWWRDGYA SGVLALPDPA PLRHIGIYGY SAGFLRRFPS LPESPLERIE SLEQLRVLWH
GERIAVHLSA VRPGPGIDTP EDLERVRRHF G