Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2557 |
Symbol | |
ID | 6163157 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2789610 |
End bp | 2790425 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641665332 |
Product | 3-deoxy-D-manno-octulosonate cytidylyltransferase |
Protein accession | YP_001791587 |
Protein GI | 171059238 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00206536 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCACGC CGGGCCGATC CGATCAGGAC GCGGGGGCAG GAACGCCGCC GGTGGATCCG GCCGTGAGCT TCACCGTGCT GGTGCCCGCC CGGCTGGCGT CGACCCGCCT GCCGCGCAAG GCGCTGGCCG ATCTGGGTGG CCTGCCGATG GTCGTGCGGG TGGCGCAGCG TTGCGCGCTC AGCGGCGCCA GCGCGGTCGT CGTCGCCACC GACAGCGAGG AGATCCGCGC CGCCTGCGCC GCCCACGGCG TGCGCGCCCT GATGACCCGC GCCGATCACC CGACCGGCAG CGACCGCCTG GCCGAGGCCT GCGTGCAGCT CGGCCTGGAC GGGCGCGACA TCGTCGTCAA CGTGCAGGGC GACGAGCCGC TGATCGAGCC CGGCCTGATC GACGCCTGCG CCGGCCTGCT GGCGCAGCGC AGCGACTGCG TGATGAGCAC CGCCGCGCAC GCGCTCGACG ACGTCGAGGA ATACGGCAAC CCGAATGTCG TCAAGGTGGT GACCGACGCA GTCGGGCGGG CGCTGTACTT CTCGCGCGCG CCGCTGCCGT GGTGGCGCGA CGGCTATGCC TCCGGCGTGC TGGCGCTGCC CGATCCGGCG CCGCTGCGCC ACATCGGCAT CTACGGCTAC AGCGCCGGTT TCCTGCGGCG CTTCCCGAGC CTGCCCGAGA GCCCGCTCGA GCGCATCGAG TCGCTCGAAC AGCTGCGCGT GCTCTGGCAC GGCGAACGCA TCGCGGTGCA CCTGAGCGCG GTGCGCCCCG GGCCCGGCAT CGACACCCCC GAAGACCTCG AACGCGTGCG CCGCCACTTC GGCTGA
|
Protein sequence | MSTPGRSDQD AGAGTPPVDP AVSFTVLVPA RLASTRLPRK ALADLGGLPM VVRVAQRCAL SGASAVVVAT DSEEIRAACA AHGVRALMTR ADHPTGSDRL AEACVQLGLD GRDIVVNVQG DEPLIEPGLI DACAGLLAQR SDCVMSTAAH ALDDVEEYGN PNVVKVVTDA VGRALYFSRA PLPWWRDGYA SGVLALPDPA PLRHIGIYGY SAGFLRRFPS LPESPLERIE SLEQLRVLWH GERIAVHLSA VRPGPGIDTP EDLERVRRHF G
|
| |