| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2550 |
|---|
| Symbol | |
|---|
| ID | 6163535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2783070 |
|---|
| End bp | 2784368 |
|---|
| Gene Length | 1299 bp |
|---|
| Protein Length | 432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641665325 |
|---|
| Product | squalene-associated FAD-dependent desaturase |
|---|
| Protein accession | YP_001791580 |
|---|
| Protein GI | 171059231 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2907] Predicted NAD/FAD-binding protein |
|---|
| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.005489 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGCTG ACGAACCCGT CCGGCGCCGC ATCGCGGTGA TCGGCGGCGG CTGGGCCGGC
CTGGCCGCAG CGGCCGAAGC CACGGCGCGA GGCCATGAGG TCACGCTGTT CGAGATGGCA
CCACGGCTCG GCGGCCGGGC CCGCAGCCTG GCTGCAGCCG AGCCCGGCGC CACACCGCTC
GACAACGGCC AGCACATCCT GATCGGCGCC TACACCGCCA CGCTCGCGCT GATGCGCAGC
GTCGGCGTCG ACCCTGACGC CGTGCTGCTG CGCATGCCGC TGACCTTGGT CGATGCCGAC
GGCCGCGGCC TGCGGCTCGG CCGCGGCCCG GTGCCGATCG CCTTCACGCG CGCGGTCTGG
GCGATGGCGC ACTGGCGCTG GCGCGAGCGG CTGGCGCTGT CGAACGCGGC GCTGGGCTGG
CTGCTGCGCG GCTTCCGTTG CGATCCGACG TGGACGGTCG CGCGACTGAC CGCGACGCTG
CCCGAGCGCG TGCGCCACGA GTTCGTCGAC CCGCTGTGCG TCGCCGCCCT GAACACGCCT
GCGGACGCGG CCAGCGCGAC GGTCTTCCTG CGCGTGCTGC ACGACGCGCT CTTCGCCGGC
CCGGGATCGA GCGACCTGCT GGTACCACGC CGTCCGCTGG CGGAGCTGCT GCCCGAGCCG
GCGCAAGCCT GGTTGATCGG GCACGGCGTG AAAGTCCACA CCGCGCGGCG CGTGCAGCAC
CTGCAACGCT CGGCCGACGG CTGGACGGTC GATGGCGAGG CCTTCGACCG CGTCGTGCTG
GCCTGCAGCG CCAGCGAGGC GGCGCGCCTG ACCGCCGATG TCGCGCCGGC CTGGTCCGCG
CTCGCCGCCG CCTTCGGCTA CGAGCCGATC GTGACGGTCT ACCTCCACGC CCCGGGCGCC
CGGCTGGTCG CGCCGATGGT GGCGCTGGCC GAGGGGCCAC AGGCGCCGGC GCAGTTCGCT
TTCGACCACG GCGCGCTGGG CGCTGCGGCG GGCGTGTTCG CCTTGGTCGT CAGCGGGGCG
GCGCCGTGGG TGGCGCGCGG GCTCGAGGCC ACGTGTGCGG CGGCGCTGGC GCAGGCGCAG
ACGGTGCTGC GAGGGGTCGA TGCCCGCGGG ATCGCGGTGA TGAAGGTCGT CGCCGAGAAG
CGGGCGACGT TTCGGTGCGT GCCCGGGCTG GATCGGCCGG GTGCGTCCAT CGCCGAGGGG
CTGGTGGCGG CGGGGGACTA TGTCGACGGG CCGTATCCGG CGACGCTGGA GGGTGCGGTG
CGCAGCGGGG TGGCGGCGGC GGTGGGTGGG TTGGGCTGA
|
|---|
| Protein sequence | MAADEPVRRR IAVIGGGWAG LAAAAEATAR GHEVTLFEMA PRLGGRARSL AAAEPGATPL
DNGQHILIGA YTATLALMRS VGVDPDAVLL RMPLTLVDAD GRGLRLGRGP VPIAFTRAVW
AMAHWRWRER LALSNAALGW LLRGFRCDPT WTVARLTATL PERVRHEFVD PLCVAALNTP
ADAASATVFL RVLHDALFAG PGSSDLLVPR RPLAELLPEP AQAWLIGHGV KVHTARRVQH
LQRSADGWTV DGEAFDRVVL ACSASEAARL TADVAPAWSA LAAAFGYEPI VTVYLHAPGA
RLVAPMVALA EGPQAPAQFA FDHGALGAAA GVFALVVSGA APWVARGLEA TCAAALAQAQ
TVLRGVDARG IAVMKVVAEK RATFRCVPGL DRPGASIAEG LVAAGDYVDG PYPATLEGAV
RSGVAAAVGG LG
|
|---|
| |