| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2544 |
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| Symbol | |
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| ID | 6162165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2774480 |
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| End bp | 2775088 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641665318 |
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| Product | ATP-dependent Clp protease, proteolytic subunit ClpP |
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| Protein accession | YP_001791574 |
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| Protein GI | 171059225 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.00389922 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGCGCAG TCGAAACTCA AAACCTGGGC ATGGTGCCCA TCGTCATCGA ACAGTCGGGC
CGCGGCGAGC GCGCCTACGA CATCTACTCG CGCCTGCTGC GCGAGCGAGT GATTTTCCTG
GTCGGACCGG TCAACGACCA GAGCGCCAAT CTGGTGGTCG CGCAGTTGCT GTTTCTGGAA
AGCGAGAATC CCGACAAGGA CATCTCGTTC TACATCAACT CGCCCGGCGG CAGCGTCAGC
GCCGGCATGT CGATCTACGA CACGATGCAG TTCATCAAGC CGCAGGTGTC GACGCTGTGC
ATGGGCCTGG CGGCCAGCAT GGGCGCGTTC CTGCTGGCGG CCGGCGCCAA GGGCAAGCGC
TTCTCGCTGC CCAACAGCAA GATCATGATC CACCAGCCGC TGGGCGGCGC GCAGGGTCAG
GCCACCGACA TCGAGATCCA TGCCCGCGAG ATCCTGAAGA CGCGCGAGCA ACTCAACCGC
ATCCTGGCCG AGCGCACGGG GCAGTCGCTG GAAAAGATCC AGAACGACAC CGAGCGCGAT
TACTTCATGT CCTCCGAAGA GGCGCAGACT TACGGCCTGA TCGACCAGGT CATCAGCAAG
CGCCCGTAA
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| Protein sequence | MSAVETQNLG MVPIVIEQSG RGERAYDIYS RLLRERVIFL VGPVNDQSAN LVVAQLLFLE
SENPDKDISF YINSPGGSVS AGMSIYDTMQ FIKPQVSTLC MGLAASMGAF LLAAGAKGKR
FSLPNSKIMI HQPLGGAQGQ ATDIEIHARE ILKTREQLNR ILAERTGQSL EKIQNDTERD
YFMSSEEAQT YGLIDQVISK RP
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