| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2542 |
|---|
| Symbol | |
|---|
| ID | 6162503 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2770631 |
|---|
| End bp | 2773048 |
|---|
| Gene Length | 2418 bp |
|---|
| Protein Length | 805 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641665316 |
|---|
| Product | ATP-dependent protease La |
|---|
| Protein accession | YP_001791572 |
|---|
| Protein GI | 171059223 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
|---|
| TIGRFAM ID | [TIGR00763] ATP-dependent protease La
[TIGR00764] lon-related putative ATP-dependent protease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00142906 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGTC ACCCTATCCT CCCCGCGGAT CCGATCACCC TGCCACTGTT GCCGTTGCGC
GATGTGGTGG TGTTCCCGCA CATGGTGATC CCGCTTTTCG TGGGACGCCC GAAGTCGATC
AAGGCGCTCG AAGCTGCGAT GGAAGCCGGC CGGCAGATCA TGCTGGTGGC CCAGAAGGCT
GCCGGCAAGG ACGAGCCCAA GCCGGAAGAC ATGTTCGAGA CCGGTTGCGT CTCGAGCATC
TTGCAGATGC TCAAGCTGCC CGACGGCACC GTGAAGGTGC TGGTCGAAGG TCTGCAACGC
GCCAACACAC GCAGCATCGA TGACAGCGGC GAGTTCTTCA CCGCCGAACT GGTGCCCGTG
CCGCTGCCCG ATCAGGCCTC GCCCGAGATC GAGGCGCTGC GACGCGCGGT CACGCAGCAG
TTTGACCAGT ACGTCAAGCT GAACAAGAAG ATCCCGCCGG AGATCCTCAC CTCGATCGCC
GGGATCGACG ATGCAGGCCG TCTGGCCGAC ACCATCGCCG CCCATCTGCC GCTCAAGCTC
GAGAGCAAGC AGGCCATCCT CGACATGGTG GCGATCTCCG GTCGGCTGGA AAAGCTGCTG
GAGCTGCTTG AGCACGAGGT CGACATCCTG CAGGTCGAAA AGCGCATCCG TGGTCGCGTC
AAGCGCCAGA TGGAAAAGAG CCAGCGCGAG TACTACCTCA ACGAGCAGGT CAAGGCGATC
CAGAAGGAAC TGGGCGAAGG TGAAGAGGGC GCCGATCTCG ATGAACTCGA GAAGAAGATC
ATCGCGGCCC GGATGTCCCG CGAAGCGCGC AAGAAAGCCG AGAACGAGCT CAAGAAGCTC
AAGCTGATGT CGCCCATGTC GGCCGAAGCG ACGGTGGTGC GCAACTACAT CGACACGCTG
ATCAACCTGC CCTGGGCCAA GAAGAGCAAG GTCAAGCACG ATCTGCCCAA CGCCGAGAAC
GTGCTCAACG AAGACCACTT CGGTCTCGAC AAGGTCAAGG AACGCATCCT CGAATACCTT
GCGGTGCAGC AGCGCGTCGA CAAGGTCAAG GCGCCGATCC TGTGCCTGGT CGGCCCTCCG
GGTGTCGGCA AGACCTCGCT CGGTCAGTCG GTGGCGCGTG CGACCGGACG CAAGTTCGTG
CGCATGGCGC TCGGTGGTGT GCGTGACGAG GCCGAGATCC GTGGCCACCG CCGCACCTAC
ATCGGCTCGA TGCCGGGCAA GGTGCTGCAG AGCCTGAGCA AGGTCGGCGT GCGCAACCCG
CTGTTCCTGC TCGACGAGAT CGACAAGCTG GGCATGGATT TCAGGGGCGA TCCGTCGTCG
GCGCTGCTGG AAGTGCTCGA CCCCGAGCAG AACCACACCT TTGCCGACCA CTACGTCGAG
GTCGACTTCG ACCTGTCCGA CGTGATGTTC GTGGCGACCT CCAATTCGCT GAACATCCCG
CCGGCGCTGC TCGACCGCAT GGAGGTGATC CGTCTTTCGG GCTACACCGA AGACGAGAAG
GTTTCGATCG CCCAACGTTA CCTGTTGCCC AAGCAGCTCA AGAACAACGG CGTCGCCGAA
ACCGAACTCG AAGTCACCGA GAGCGCGGTG AGGGCGATCA TCCGCTACTA CACGCGTGAA
GCCGGCGTGC GTTCGCTCGA GCGAGAGATC TCCAAGATCT GCCGCAAGGT GGTCAAGGGG
TTGACGCTCA AGAAGTACGT GGGCCTCGTG CAGGTGACGG CAGAAAATCT CAACGATTAC
CTCGGGGTAC GCAAGTACAG CTTCGGCCAG GCCGAGAAGC AGAACCAGGT CGGTCAGGTC
AATGGCCTGG CGTGGACCGA GGTGGGTGGT GATCTGCTCA CCATCGAGGC GACCGTGATG
TCTGGCAAGG GCACCATCAT CCGCACCGGC TCGCTCGGTG ACGTGATGAA GGAGTCGGTC
GAAGCCGCAC GCACCGTGGT CCGCAGTCGT GCAGCACGCC TGGGCATCAA GGACGAGATG
TTCGAGAAGC GCGACATCCA CATCCACGTG CCCGATGGCG CAACGCCCAA GGACGGCCCG
AGTGCGGGAG CCGCGATGAC CACCGCGTTC GTATCGGCGT TGACGGGCAT TCCGGTGCGC
GCTGACGTCG CCATGACGGG TGAGATCACC CTGCGTGGTG AAGTCACCGA AATCGGCGGA
CTGAAGGAGA AACTGCTGGC CGCTCACCGC GGGGGCATCA AGACGGTCTT GATCCCCGAG
GAAAACGCCA AGGATCTCCA GGAGATTCCC GAGAACGTGA AAAGTCAGCT TGAGATCATT
CCGGTCAAGT GGATCGACAA GGTGCTCGAG ATCGCCTTGA CGTCCAAACC TCAGCCTTTG
CCGGAAGAGG AGGCGAAGGT CGAAGCGCCG AAGACGCCGG ATGCCGCGCC GGTCGTCGTT
GACGCGACCA AGCATTGA
|
|---|
| Protein sequence | MSGHPILPAD PITLPLLPLR DVVVFPHMVI PLFVGRPKSI KALEAAMEAG RQIMLVAQKA
AGKDEPKPED MFETGCVSSI LQMLKLPDGT VKVLVEGLQR ANTRSIDDSG EFFTAELVPV
PLPDQASPEI EALRRAVTQQ FDQYVKLNKK IPPEILTSIA GIDDAGRLAD TIAAHLPLKL
ESKQAILDMV AISGRLEKLL ELLEHEVDIL QVEKRIRGRV KRQMEKSQRE YYLNEQVKAI
QKELGEGEEG ADLDELEKKI IAARMSREAR KKAENELKKL KLMSPMSAEA TVVRNYIDTL
INLPWAKKSK VKHDLPNAEN VLNEDHFGLD KVKERILEYL AVQQRVDKVK APILCLVGPP
GVGKTSLGQS VARATGRKFV RMALGGVRDE AEIRGHRRTY IGSMPGKVLQ SLSKVGVRNP
LFLLDEIDKL GMDFRGDPSS ALLEVLDPEQ NHTFADHYVE VDFDLSDVMF VATSNSLNIP
PALLDRMEVI RLSGYTEDEK VSIAQRYLLP KQLKNNGVAE TELEVTESAV RAIIRYYTRE
AGVRSLEREI SKICRKVVKG LTLKKYVGLV QVTAENLNDY LGVRKYSFGQ AEKQNQVGQV
NGLAWTEVGG DLLTIEATVM SGKGTIIRTG SLGDVMKESV EAARTVVRSR AARLGIKDEM
FEKRDIHIHV PDGATPKDGP SAGAAMTTAF VSALTGIPVR ADVAMTGEIT LRGEVTEIGG
LKEKLLAAHR GGIKTVLIPE ENAKDLQEIP ENVKSQLEII PVKWIDKVLE IALTSKPQPL
PEEEAKVEAP KTPDAAPVVV DATKH
|
|---|
| |