| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2535 |
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| Symbol | |
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| ID | 6163166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2763640 |
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| End bp | 2764209 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641665305 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001791565 |
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| Protein GI | 171059216 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02943] RNA polymerase sigma-70 factor, TIGR02943 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.000915947 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGACC TGGCGTCGCA GTTGCAGGGC CTGCGTGAGC CGCTGATGCG CTACGCCCGC
AAACAGTTGC GCAACGAGGC CTGGGCCGAG GATGCGGTGT CGGAGACGCT GCTCGCAGCA
CTCGAAAAGC CGCAGCAGTT TGCCGGCCAG AGCCAGCTCA AGACCTGGCT GGTGGGCATT
CTCAAGCACA AGCTGGTCGA CCAGATCCGC CGCCACGGCC GCGAGATCTC GGCCACGCCC
GACGATGACC AGGACATCGA CGACCTGCTG TTCAAGGCCG ACGGCCACTG GCGCGAGGCG
CCGCACGAAT GGGGCAACCC CGAGGCCAGC CTCGGCCAGC GTCAGTTCAT CGAGGTGCTC
GACGCCTGCG TCGAACATCT GCCCGGCCAG CAAGGCCAGG TTTTCATGAT GCGCGAGTGG
CTCGAACTGG AGACGACGGA AATCTGTAAT CAACTCGGCC TGAGCTCGAC CAACCTGTTC
GTGCTGCTGC ATCGCGCCCG ATTGCGGCTG CGTGACTGCC TGCAGTTGCG CTGGTTCAAC
CATCCGAACC CATCAAAGGC CCGAGCGTGA
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| Protein sequence | MTDLASQLQG LREPLMRYAR KQLRNEAWAE DAVSETLLAA LEKPQQFAGQ SQLKTWLVGI
LKHKLVDQIR RHGREISATP DDDQDIDDLL FKADGHWREA PHEWGNPEAS LGQRQFIEVL
DACVEHLPGQ QGQVFMMREW LELETTEICN QLGLSSTNLF VLLHRARLRL RDCLQLRWFN
HPNPSKARA
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