Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2526 |
Symbol | |
ID | 6163981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2755096 |
End bp | 2755914 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641665296 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001791556 |
Protein GI | 171059207 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0123409 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGACA TGCAGTCGAT GCAGACTTTT CTCAGCACCA CCGTCAGCGA TCTGGCGGTG AAGATCTTGG CCGCTGTCGC ATTCTGGATC GTCGGCCGCT GGCTGATCGG CCGAGTGATT GCAGTCATGC AAGCGGCCAT GAACCGCAAT GCGGTCGATC CGACGCTGAC CAAGTACCTC GGCTCGATCG TCGCGATCAC GCTGAACATC ACCCTGGTGC TCGGCATCCT GGGCTACTTC GGCATCCAGA CCACCTCGTT TGCGGCCATG CTGGCCGGTG TGGGCGTGGC GATCGGCGCG GCCTGGAGCG GCATGCTGGG CAACTTCGCC GCAGGTGCCT TCATGCTGGT GCTGCAGCCG TTCAAGGTGG GGGATTTCGT CACCATCGGC GGCGTGACCG GCACGGTGCG CGAACTGGGC CTGTTCGGCA CCACGCTGCT GACACCCGAC AACGTGCAGA CGATCGTCGG CAACGGCAAG GCCTTCAGCG ACACGATCCA GAACTTCTCG TCCATGCCGG TGCGCCGCGT CGATCGCACC GCACAGCTCG CCGGCAGCGT CGACCCGCTG GACGCGATCG CGCGCTTCAA GGCCGCCGTC GCCCAGATCC CCAATGTGGC CACCAGCCCG GCCCCGGAGG TGAACCTGCT CGACTTCAAC CTGGTCGGCT GCGTGATCTC GGTGCGTCCT TACACCCACA CCGACCACTA TTGGCAGGTC TATTTCGACA CCAACGAAGC GATCGCCCGG GTCGCCAAGG AAGCCGGCTG GCCCGCGCCG ACACCCAGCG CCATCCATCA CATCGTCCCG GCGGCCTGA
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Protein sequence | MMDMQSMQTF LSTTVSDLAV KILAAVAFWI VGRWLIGRVI AVMQAAMNRN AVDPTLTKYL GSIVAITLNI TLVLGILGYF GIQTTSFAAM LAGVGVAIGA AWSGMLGNFA AGAFMLVLQP FKVGDFVTIG GVTGTVRELG LFGTTLLTPD NVQTIVGNGK AFSDTIQNFS SMPVRRVDRT AQLAGSVDPL DAIARFKAAV AQIPNVATSP APEVNLLDFN LVGCVISVRP YTHTDHYWQV YFDTNEAIAR VAKEAGWPAP TPSAIHHIVP AA
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