| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2518 |
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| Symbol | |
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| ID | 6161483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2749050 |
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| End bp | 2750198 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641665288 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001791548 |
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| Protein GI | 171059199 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.00740773 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACCTGC CCACACTCTC CCTGGTCGAA GAACTGATCG CCCGGCGCTC GGTCACGCCC
GACGACGCCG GCTGTCAGGC GCTGATCGCC GCCCGCCTGG CGGCGCTCGG TTTCGAGATC
CACGCCCTGC CGCACGGCCC GGCCGACGCG CGGGTCGACA ACCTGTGGGC GATCCGGCGC
GGCCAGGGCG ACGGCCCGAC GCTGGTGCTG GCCGGCCACA CCGACGTGGT GCCCACCGGC
CCGCTCGAAC GCTGGCACAG CGACCCCTTC GTGCCCTCCC ACCGCGCCGG CCTGCTCTAC
GGCCGCGGCG CCGCCGACAT GAAGACCTCG CTGGCGGCGA TGGTGGTGGC GGTGGAGGAA
TTCGTCGCCG CCCATCCGGT GCACCGCGGC AGCGTGGCCT TCCTGCTGAC CAGCGACGAA
GAAGGACCGG CGGTCGATGG CACCGTCAAG GTCTGCGAGT GGCTGGCCGC GCGCGGCGAG
CGGCTCGACG CCTGCATCGT CGGCGAGCCG ACCTCGGTGC GCCAGCTCGG CGACATGATC
AAGAACGGCC GCCGCGGCTC GCTCTCCGGG CGCCTCACGG TGGTCGGCCA GCAGGGCCAC
ATCGCCTACC CGCACCTGGC CAGGAATCCG ATCCACCTGG CCGCGCCGGC GCTGGCCGAG
CTGGCGCAGC AGCGCTGGGA CGACGGCAAC GAGCACTTCC CGCCGACCAG CTGGCAGATG
TCGAACATCC ACGCCGGCAC CGGCGCCACC AACGTCATCC CCGGCGAACT GGTGGTGGAT
TTCAATTTCC GCTTCTCGAC CGAATCGACG CCCGAGAGCC TGCAGCAGCA GGTGCACGCG
CTGCTCGATC GCCACGGCCT CGAGCACCGC ATCGCCTGGA CCCTGGGCGG GCGGCCCTTC
CTGACCCGGC CCGGCAGCCT GACCGACGCG CTCAGCCAGG CGATCACCGC GGTCACCGGC
CTGCGCACCG AGCTGTCGAC CACCGGCGGT ACCTCGGACG GGCGGTTCAT CGCGCAGATC
TGTCCGCAGG TGGTCGAGTT CGGCCCGGTC AACGCGACGA TCCATCAGGT CGACGAACAC
TGCGAGGTGG CCGCCCTCGG GCCGCTGAAA GACATCTATC GACGCACGCT GGAGGCGATG
CTGGCATGA
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| Protein sequence | MHLPTLSLVE ELIARRSVTP DDAGCQALIA ARLAALGFEI HALPHGPADA RVDNLWAIRR
GQGDGPTLVL AGHTDVVPTG PLERWHSDPF VPSHRAGLLY GRGAADMKTS LAAMVVAVEE
FVAAHPVHRG SVAFLLTSDE EGPAVDGTVK VCEWLAARGE RLDACIVGEP TSVRQLGDMI
KNGRRGSLSG RLTVVGQQGH IAYPHLARNP IHLAAPALAE LAQQRWDDGN EHFPPTSWQM
SNIHAGTGAT NVIPGELVVD FNFRFSTEST PESLQQQVHA LLDRHGLEHR IAWTLGGRPF
LTRPGSLTDA LSQAITAVTG LRTELSTTGG TSDGRFIAQI CPQVVEFGPV NATIHQVDEH
CEVAALGPLK DIYRRTLEAM LA
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