| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2515 |
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| Symbol | |
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| ID | 6161468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2745658 |
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| End bp | 2746881 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641665285 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_001791545 |
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| Protein GI | 171059196 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.0423889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGC TCCTCTCACG CCTGCAGCCG TATCCGTTCG AGCGGTTGCG CGCGCTCATG
CAAGACATCG TGCCGAATCC GGCCCTGCGA CCGGTCAGCC TGGGCATCGG CGAGCCCAAG
CACGCCACGC CGCAGTTCCT GAAGGACAGA CTCAGCGCCA CGCTCGCCGG CCTGGCCGCC
TACCCCGCCA CCGCCGGCCT GCCCGAGATG CGCGCCGCCT GCGCCGCCTG GGTGCAACGC
CGCTACGGCG TCAGCGTCAA TCCGGCCACC GAGGTGCTGC CGGTCAACGG CTCGCGCGAG
GCGCTGTTCG CGCTGGCGCA GACCGTGATC GACCCGACCC GCGACGCCGA TCGCGGCGGC
CCGGTGGTGG TCTGCCCGAA TCCGTTCTAT CAGATCTACG AGGGCGCGGC CTACCTGGGC
GGCGCCACGC CGGTGTTCGC CAACAGCGAC CCGGCGCGCA ACTTCGCCGC CGACTGGAAC
CAGATCGACG AGGCCACCTG GGCCCGCACC CAGCTGCTGT ACGTCTGCTC GCCCGGCAAC
CCGGCCGGCG CGGTGGTGCC GCTCGACGAG TGGGCGCGGC TGTTCGAGCT GAGCGACCGG
CACGGCTTCG TGATCGCGTC CGACGAGTGC TATTCGGAGA TCTGGTTCCG CGACGAGCCC
CCGCTGGGCG CGCTGCAGGC CGCGCAGCAG CTCGGCCGCG ACTTCACCCG GCTGGTGGTG
CTGACCAGCT TGTCCAAGCG CTCCAACGTG CCGGGGCTGC GGTCGGGTTT TGTCGCCGGC
GATGCGCAGA TCCTGAAGAA CTTCCTGCTC TACCGCACCT ACCACGGCAG CGCGATGGCC
ACGCCGGTGC AGCACGCCAG CATCGCCGCC TGGAACGACG AGGCGCACGT GGTCGAGAAC
CGCGCGCTCT ACCGCACCAA GTTCGCCCAG GTCACGCCGG TGCTGGCCGA GGTGATGGAC
GTGGCGCTGC CCGACGCGGC CTTCTACCTC TGGGCCCGCG TGCCCGACGA CGTCTGCGGC
GGCTCGGACA CCACCTTCGC GCGCGAACTG CTGCGTCAAT ACAATGTGGC GGTACTGCCG
GGCAGCTACC TGGCGCGCGA GGCTCACGGC GTGAACCCGG GCGCCGGCCG CATCCGCATG
GCGCTGGTCG CCGAGGTGGA TGAATGCCTC GAAGCCGCCC AGCGCATCGC CGCCTTCATC
CGCGCCCAGC GCGAGCCGGC ATGA
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| Protein sequence | MNPLLSRLQP YPFERLRALM QDIVPNPALR PVSLGIGEPK HATPQFLKDR LSATLAGLAA
YPATAGLPEM RAACAAWVQR RYGVSVNPAT EVLPVNGSRE ALFALAQTVI DPTRDADRGG
PVVVCPNPFY QIYEGAAYLG GATPVFANSD PARNFAADWN QIDEATWART QLLYVCSPGN
PAGAVVPLDE WARLFELSDR HGFVIASDEC YSEIWFRDEP PLGALQAAQQ LGRDFTRLVV
LTSLSKRSNV PGLRSGFVAG DAQILKNFLL YRTYHGSAMA TPVQHASIAA WNDEAHVVEN
RALYRTKFAQ VTPVLAEVMD VALPDAAFYL WARVPDDVCG GSDTTFAREL LRQYNVAVLP
GSYLAREAHG VNPGAGRIRM ALVAEVDECL EAAQRIAAFI RAQREPA
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